CN189434

Overview
NameCN189434
Unique NameCN189434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:947..1654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.884e-90
Identity = 165/167 (98.80%), Postives = 167/167 (100.00%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  246 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.595e-89
Identity = 163/167 (97.60%), Postives = 166/167 (99.40%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELPSNVADLL
Sbjct:  247 ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.595e-89
Identity = 163/167 (97.60%), Postives = 166/167 (99.40%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVEKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELP+NVADLL
Sbjct:  248 ELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.721e-89
Identity = 162/167 (97.01%), Postives = 167/167 (100.00%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ++TLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  247 DVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.554e-89
Identity = 162/167 (97.01%), Postives = 166/167 (99.40%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVEKE+WKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELP+NVADLL
Sbjct:  248 ELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.642e-89
Identity = 163/167 (97.60%), Postives = 166/167 (99.40%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  247 ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 6.062e-89
Identity = 162/167 (97.01%), Postives = 166/167 (99.40%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVEKE+WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVT DD+RMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  246 ELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.034e-88
Identity = 162/167 (97.01%), Postives = 165/167 (98.80%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNVEKEEWKL+TLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  248 ELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.034e-88
Identity = 161/166 (96.99%), Postives = 165/166 (99.40%), Query Frame = -1
Query:  212 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 709
            ELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELP+NVADL
Sbjct:   88 ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253          
BLAST of CN189434 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 1.351e-88
Identity = 161/167 (96.41%), Postives = 165/167 (98.80%), Query Frame = -1
Query:  209 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 709
            ELTLEGIKQFYVNV+KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG SGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  247 ELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
The following BLAST results are available for this feature:
BLAST of CN189434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_ARATH1.884e-9098.80Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A8_TOBAC1.595e-8997.60Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A1_ORYSJ1.595e-8997.60Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF414_TOBAC2.721e-8997.01Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A3_ORYSJ3.554e-8997.01Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A2_NICPL4.642e-8997.60Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF4A2_ARATH6.062e-8997.01Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A_WHEAT1.034e-8897.01Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A6_TOBAC1.034e-8896.99Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF411_TOBAC1.351e-8896.41Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189434 ID=CN189434; Name=CN189434; organism=Citrus sinensis; type=EST; length=709bp
CCCTTTTTTTTTCAATGTGCATGACCCATATGATTAAATGGTCGGATATG
TTTGAGAACAACATTAATTTAAGACACTAGACGGAAAGGAAGAAGAAACC
AAAAAAAAAAAAAAAAGGGGAGAAAATATCCACCACATTAAATAGTACTT
GCAAAATCAGGAAACCCCTTCTTGCCTCGACAAACTTACAAAAAACAGAA
CCTCCTCAAAGAAGGTCAGCAACATTTGAAGGCAGCTCCTCAATGACCAC
GTTATAGAACTTTTGAATATCAAAAAGCATTCTCTCATCATCCCTTGTCA
CAAAATTAATGGCAACACCCTTTCTTCCAAATCGACCACTTCGTCCAATA
CGGTGAAGGTAGTTTTCTGGTTGAGTCGGCAGATCATAATTTATGACAAG
TGAAACTTGCTGCACATCAATACCACGAGCCAACAGATCAGTGGTGATGA
GAACACGAGAAGAACCAGAGCGAAATTCACGCATAATGATATCTCGGGTG
TTCTGATCCATGTCCCCATGAGTGGCAGAGACTGTATGGTCACGGCTTCG
CATCTTGTCAGTAAGCCAGTCGACCTTTCGCCGAGTGTTCACAAAGATGA
CACTCTGGGTTATGGCCAGAGTCTCATAAAGATCACAGAGTGTTTCAAGC
TTCCATTCTTCCTTCTCAACATTGACATAAAACTGCTTGATACCCTCAAG
GGTGAGTTC
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