CN189432

Overview
NameCN189432
Unique NameCN189432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.169e-75
Identity = 126/155 (81.29%), Postives = 140/155 (90.32%), Query Frame = -1
Query:  283 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 747
            DAG+LA++Y L+ L  AKGL +V C+YG PLLVVNGFLVLIT LQHTHP+LPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY+FD TPF KAMWREA+EC+YVEPD+  ++KGVFWY NK+
Sbjct:  229 DAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.694e-73
Identity = 124/155 (80.00%), Postives = 135/155 (87.10%), Query Frame = -1
Query:  283 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 747
            DAGILA+ Y LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAME TKAIKPILG+YYQFDGTP+ KAMWREAKEC+YVEPD   + KGVFWY NK+
Sbjct:  230 DAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKGVFWYNNKL 384          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.653e-71
Identity = 119/154 (77.27%), Postives = 134/154 (87.01%), Query Frame = -1
Query:  286 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNK 747
            D  + ++ YSLY +   KGLV++ C+YG PLL+VNGFLV IT LQHTH +LPHY SSEWDW +GALAT+DRDYGILNKVFH+ITDTHVAHHLFSTMPHYHAMEAT AIKPILGEYYQFD TPFYKA+WREA+ECLYVEPDEG   KGV+WYRNK
Sbjct:  233 DVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFALPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKGVYWYRNK 386          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.063e-70
Identity = 121/155 (78.06%), Postives = 135/155 (87.10%), Query Frame = -1
Query:  283 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWYRNKI 747
            DAGILA+ + LY   AA+G+  + C+YG PLL+VN FLVLIT LQHTHPSLPHY SSEWDW RGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY+AMEATKAIKPILG+YYQFDGTP+Y AM+REAKEC+YVEPD     KGV+WY NK+
Sbjct:  229 DAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHTHPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKGVYWYNNKL 383          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 4.960e-52
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = -1
Query:  295 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGDQNKGVFWY 747
            D G+LA++Y +   VAAKG  +V CIYG P+L V  F  +IT L HTH SLPHY SSEW+W RGAL+T+DRD+G LN V H++T THV HHLFS +PHYHA EA  AI  +LG++Y+ D TP  KAMWREAKEC+++EP++G  +KGV+WY
Sbjct:  222 DLGLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHTHLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKGVYWY 372          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.039e-33
Identity = 75/144 (52.08%), Postives = 92/144 (63.89%), Query Frame = -1
Query:  319 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 747
            D G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  252 DLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.357e-33
Identity = 75/144 (52.08%), Postives = 92/144 (63.89%), Query Frame = -1
Query:  319 DAGILAMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHTHPSLPHYHSSEWDWFRGALATVDRDYG-ILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTPFYKAMWREAKECLYVEPDEGD 747
            D G+LA + +L        L+ V   Y  P L VN +LVLIT LQHT P LPHY    W++ RGAL TVDR +G  L+ +FH I  THVAHHLFS MP YHA EAT  +K +LGEYY +D +P   A+WR  +EC +VE D GD
Sbjct:  252 DLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQHTDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE-DHGD 394          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD3E_TOBAC (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.663e-23
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = -1
Query:  319 LYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYY----QFDGTPFY--KAMWREAKECLYVEPDEGD 717
            L  L  A G + +F IYG P L+   +L  +T L H      LP Y   EW + RG L TVDRDYG+ N + H+I  THV HHLF  +PHYH  EATKA KP+LG+YY    +    PF+  K + R  K+  YV  D G+
Sbjct:  223 LLYLCTAFGSLQMFKIYGAPYLIFVMWLDFVTYLHHHGYEKKLPWYRGKEWSYLRGGLTTVDRDYGLFNNIHHDI-GTHVIHHLFPQIPHYHLREATKAAKPVLGKYYREPKKSGPIPFHLVKDLTRSMKQDHYVS-DSGE 361          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.556e-21
Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = -1
Query:  397 AMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 732
            AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  284 AMAALLVCLNFTIGPIQMLKLYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
BLAST of CN189432 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.032e-21
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  397 AMIYSLYCLVAAKGLVYVFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 732
            AM   L CL    G + +  +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  277 AMAALLVCLNFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389          
The following BLAST results are available for this feature:
BLAST of CN189432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FD6E2_SOYBN4.169e-7581.29Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU8.694e-7380.00Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN3.653e-7177.27Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_ARATH1.063e-7078.06Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL4.960e-5259.60Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD12_MORAP1.039e-3352.08Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.357e-3352.08Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FAD3E_TOBAC1.663e-2344.68Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH1.556e-2144.74Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3D_ARATH2.032e-2144.74Temperature-sensitive omega-3 fatty acid desaturas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189432 ID=CN189432; Name=CN189432; organism=Citrus sinensis; type=EST; length=747bp
TTTTTTTTTTTTTTTCTGAACAGAGATGGATCCTCTCTGCACAAGAAACT
TAAAAAGTAGGATAACAAATTTTACTCGTAGGCATTTTTGTTCGTGGTTC
ATTTCTAACACAACCAGGGTTAACGAAATTATTGGAGGAAACATAACTAA
AAGTCTATAATTAAAGTTCAATTAAAAGTAACAGAACAACCTCAATTACC
ACAAAAGGGAAGCCAAATTACCCGACAAGAAACACAAAACTTCCCATATG
GCATTTTTTGCTACAACTTTTCCTCAAATTCAAATCTTATTTCTGTACCA
GAAGACACCTTTGTTCTGGTCACCTTCGTCTGGTTCAACGTAAAGACACT
CCTTTGCTTCCCTCCACATTGCCTTATAAAATGGAGTCCCATCGAACTGA
TAATATTCTCCCAAAATTGGCTTTATTGCCTTCGTAGCTTCCATTGCATG
ATAATGTGGCATTGTTGAAAACAAATGGTGAGCTACATGAGTATCAGTAA
TGTTATGGAAGACCTTGTTCAAGATCCCATAGTCTCTATCAACAGTTGCT
AGGGCTCCTCGGAACCAGTCCCATTCTGAAGAATGGTAATGTGGCAGTGA
AGGGTGAGTGTGCTGCAACAATGTGATCAAAACGAGAAATCCGTTCACTA
CCAGCAAAGGTCCTCCATAGATGCAGAACACGTACACAAGTCCTTTTGCT
GCTACAAGACAGTAGAGACTGTAAATCATAGCTAAAATTCCAGCATC
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