CN189430

Overview
NameCN189430
Unique NameCN189430
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length635
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 80/135 (59.26%), Postives = 85/135 (62.96%), Query Frame = -2
Query:  230 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKRXXXXXXXXXXXXXXXPKRRRKVAALASVPVRAGMEMGSGVGKVARVASCTRGDQLLV 634
            GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET             RMRGSRALLNFPLR+NSGEP+PVRIKSKR               PK+RR VA        AG  M  G+     V    RGD+LLV
Sbjct:  145 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKR----SSFSSSNENGAPKKRRTVA--------AGGGMDKGLTVKCEVVEVARGDRLLV 267          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 77/139 (55.40%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  227 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR----XXXXXXXXXXXXXXXPKRRRKVAALASVPVRAGMEMGSGVGKVARVASCTRGDQLLVN 631
            KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFET             RMRGSRALLNFPLR+NSGEP+PVRI SKR                    KRRRK   L S  V+   E+G            TR D+LLV+
Sbjct:  115 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENLTSEVVQVKCEVGDE----------TRVDELLVS 243          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.716e-25
Identity = 69/137 (50.36%), Postives = 81/137 (59.12%), Query Frame = -2
Query:  227 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKRXXXXXXXXXXXXXXXPKRRRKVAALASVPVRAGMEMGSGVGKV-ARVASCTRGDQLLVN 634
            G+HYRGVR+RPWGKFAAEIRDPAKNGARVWLGT+ET             RMRGS+A LNFP RI   EPEPVR+ +KR                +RR+ VA   S  V   +E  S V +   +V   TR  QLLV+
Sbjct:  102 GRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEKSEAVE--VESKSNVLQTGCQVELLTRRHQLLVS 236          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.822e-25
Identity = 71/140 (50.71%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  227 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR---XXXXXXXXXXXXXXXPKRRRKVAALASVPVRAGMEMGSGVGKV-ARVASCTRGDQLLVN 634
            G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ET             RMRGS+ALLNFP RI   EPEPVR+  KR                  PKRRRK  A+A+      ++  S V +V  ++     G+QLLV+
Sbjct:  100 GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKRRSPEPASSSISPASENSLPKRRRK--AVAAKQAELEVQSRSNVMQVGCQMEQFPVGEQLLVS 237          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.992e-25
Identity = 70/140 (50.00%), Postives = 84/140 (60.00%), Query Frame = -2
Query:  227 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR---XXXXXXXXXXXXXXXPKRRRKVAALASVPVRAGMEMGSGVGKV-ARVASCTRGDQLLVN 634
            G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+ET             RMRGS+ALLNFP RI   EPEPVR+ +KR                  PKRRRK  A+A+      ++  S   +V  ++     G+QLLV+
Sbjct:   96 GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRRRK--AVAAKKAELEVQSRSNAMQVGCQMEQFPVGEQLLVS 233          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.208e-24
Identity = 53/78 (67.95%), Postives = 59/78 (75.64%), Query Frame = -2
Query:  401 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR 634
            G+HYRGVRQRPWGKFAAEIRDPAKNGARVWLGT+E+             RMRG++ALLNFP RI   EPEPVR+  KR
Sbjct:  104 GRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKR 181          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.837e-19
Identity = 47/78 (60.26%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  401 GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR 634
            G  YRGVR+RPWGKFAAEIRDP KNGARVWLGT+ET             ++RGS+A LNFP  I S + EPVRI+ +R
Sbjct:   89 GMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRR 166          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = -2
Query:  401 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPEPVRIKSKR 631
            KHYRGVRQRPWGKFAAEIRDP K G+RVWLGTF+T             R+RGS+A+LNFPL +   +P     + KR
Sbjct:  154 KHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRADEGEKKR 230          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = -2
Query:  428 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEP 631
            +HYRGVR RPWGKFAAEIRDP + G RVWLGTFET             R+RGS+A+LNFPL ++   P
Sbjct:  135 RHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNP 202          
BLAST of CN189430 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.115e-16
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = -2
Query:  425 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETXXXXXXXXXXXXXRMRGSRALLNFPLRINSGEPE 631
            KHYRGVRQRPWGKFAAEIRDP + G RVWLGTF+T             ++RGS+A++NFPL + + + E
Sbjct:  136 KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQE 204          
The following BLAST results are available for this feature:
BLAST of CN189430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EF100_ARATH4.216e-3259.26Ethylene-responsive transcription factor 1A OS=Ara... [more]
EF101_ARATH6.731e-3055.40Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF1_TOBAC1.716e-2550.36Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF2_NICSY3.822e-2550.71Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_TOBAC4.992e-2550.00Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_SOLLC7.208e-2467.95Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF99_ARATH1.837e-1960.26Ethylene-responsive transcription factor 13 OS=Ara... [more]
EF102_ARATH2.031e-1857.14Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF103_ARATH2.933e-1758.82Ethylene-responsive transcription factor 6 OS=Arab... [more]
ERF5_NICSY1.115e-1656.52Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189430 ID=CN189430; Name=CN189430; organism=Citrus sinensis; type=EST; length=635bp
TTTTTTTTTTTTTTTTAACACACTAACTCTTTTATATTCACAATTCCCAC
TCTCTTTTTTTTTTTTTCTTTTTTTTTTTTGCAAACACCCTTCAAAGTAC
AAACAAACTTACAAATTACAAAATCACGTGCGGGGATGATCACCCCCCCG
GCCCAAGAAAAGAAGAAAAGAACTAGTAGATCTCTCGGATAAGATCGACT
TCGGAGTTTCTTCCACGTCAGCGTCAGTTTACCAATAGCTGGTCACCACG
TGTACAGGAGGCCACTCGCGCCACTTTTCCAACTCCACTTCCCATTTCCA
TCCCGGCTCGTACTGGCACCGACGCCAAGGCAGCCACCTTTCTCCTCCTC
TTGGGGGACACACTGCCACTATCCGTGGACGAAGACGGCTCCGGCGTGGA
CCGCTTCGACTTAATTCTGACCGGCTCGGGCTCACCCGAGTTGATCCTTA
GGGGAAAATTCAAAAGAGCCCTTGATCCCCTCATCCTGTAAGCGGCTCGG
TCATAAGCCAGAGCCGCATCCTCAGCCGTCTCGAAAGTCCCGAGCCAAAC
CCGAGCCCCATTCTTAGCCGGGTCACGTATTTCGGCCGCAAACTTCCCCC
AAGGTCTCTGCCTAACCCCCCTGTAATGCTTCCCC
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