CN189427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 7.669e-75 Identity = 142/171 (83.04%), Postives = 152/171 (88.89%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG Sbjct: 1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2) HSP 1 Score: 279.641 bits (714), Expect = 1.002e-74 Identity = 141/170 (82.94%), Postives = 152/170 (89.41%), Query Frame = 3 Query: 165 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVG Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVG 170
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 1.308e-74 Identity = 142/171 (83.04%), Postives = 150/171 (87.72%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M K +KAEKKIAYDAKLC L+EEY QILV +DNVGSNQLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVG Sbjct: 1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 2.914e-74 Identity = 140/170 (82.35%), Postives = 152/170 (89.41%), Query Frame = 3 Query: 165 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVG Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVG 170
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 4.208e-73 Identity = 142/171 (83.04%), Postives = 148/171 (86.55%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M KA+KAEKKI YD KLCQLL+EYTQILV ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG Sbjct: 1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3) HSP 1 Score: 267.7 bits (683), Expect = 3.939e-71 Identity = 131/171 (76.61%), Postives = 148/171 (86.55%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGSNQLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN FL L+PLL GNVGLIFTKGDL GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG Sbjct: 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3) HSP 1 Score: 257.684 bits (657), Expect = 4.076e-68 Identity = 130/171 (76.02%), Postives = 146/171 (85.38%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN F L+ LL GNVGLIFTKGDL GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKG+KVG Sbjct: 1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 4.507e-67 Identity = 131/171 (76.61%), Postives = 142/171 (83.04%), Query Frame = 3 Query: 162 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGSNQLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN N+ L NVGLIFTKGDL GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELIKKG+KVG Sbjct: 1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVG 171
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42 Identity = 88/170 (51.76%), Postives = 113/170 (66.47%), Query Frame = 3 Query: 165 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 +V+ +KA K Y K+ +L +EY + + ADNVGS Q+QNIR LRG VVLMGKNTMM++ IR H E N L+P ++GNVG +FTKGDL APAR G +AP+ V++P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG Sbjct: 1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168
BLAST of CN189427 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1) HSP 1 Score: 170.244 bits (430), Expect = 8.558e-42 Identity = 87/170 (51.18%), Postives = 114/170 (67.06%), Query Frame = 3 Query: 165 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVG 674 +V+ +KA K Y K+ +L +E+ + + ADNVGS Q+QNIR LRG +VVLMGKNTMM++ IR H E N L+P ++GNVG +FTKGDL APAR G +AP+ V++P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG Sbjct: 1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168 The following BLAST results are available for this feature:
BLAST of CN189427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189427 ID=CN189427; Name=CN189427; organism=Citrus sinensis; type=EST; length=676bpback to top |