CN189426

Overview
NameCN189426
Unique NameCN189426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:627..1299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.826e-61
Identity = 115/134 (85.82%), Postives = 129/134 (96.27%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  144 NIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.404e-60
Identity = 117/134 (87.31%), Postives = 128/134 (95.52%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF
Sbjct:  145 NIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.128e-60
Identity = 113/134 (84.33%), Postives = 129/134 (96.27%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  144 NIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.336e-60
Identity = 114/134 (85.07%), Postives = 130/134 (97.01%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF
Sbjct:  145 NIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 222.631 bits (566), Expect = 1.453e-57
Identity = 108/134 (80.60%), Postives = 126/134 (94.03%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF
Sbjct:  145 NIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 220.705 bits (561), Expect = 5.522e-57
Identity = 108/134 (80.60%), Postives = 124/134 (92.54%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF
Sbjct:  145 NIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.123e-52
Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = -1
Query:  273 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 674
            NIPTKI KGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF
Sbjct:  145 NIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.490e-41
Identity = 80/133 (60.15%), Postives = 103/133 (77.44%), Query Frame = -1
Query:  273 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 671
            I TKI +GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  143 ITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39
Identity = 77/133 (57.89%), Postives = 102/133 (76.69%), Query Frame = -1
Query:  273 IPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 671
            I TKI +GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++ L I YPT+A+ PH  VN YK V+A+A+ T+YSFP ADKVK +LADPS F
Sbjct:  143 ITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275          
BLAST of CN189426 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 81/98 (82.65%), Postives = 93/98 (94.90%), Query Frame = -1
Query:  381 NIPTKIYKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 674
            NIPTKI KGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAAPH
Sbjct:  145 NIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
The following BLAST results are available for this feature:
BLAST of CN189426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RLA02_ARATH4.826e-6185.8260S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA0_SOYBN1.404e-6087.3160S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA03_ARATH3.128e-6084.3360S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA01_ARATH5.336e-6085.0760S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ1.453e-5780.6060S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE5.522e-5780.6060S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU9.123e-5277.6160S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ICTPU2.490e-4160.1560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_RANSY1.366e-3957.8960S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHERU6.781e-3982.6560S acidic ribosomal protein P0 OS=Chenopodium rub... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189426 ID=CN189426; Name=CN189426; organism=Citrus sinensis; type=EST; length=674bp
TTTTTTGTAGGGACGAATATTATTGTCCTAAATAAAGGATTATATAAAAT
AAAAAGGAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATA
ACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAG
TCGAACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTC
CTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAG
CAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCC
TTCACTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGC
AACCACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGG
TCGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAG
GCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCT
GTAGACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGA
AGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACC
TTGTCACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACC
CTTGTATATCTTGGTGGGGATGTT
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