CN189422

Overview
NameCN189422
Unique NameCN189422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189422_ssr125 microsatellite CN189422_ssr125:125..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig283 contig Csv1_Contig283:5..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1192_THISH (UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=Tgr7_1192 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.842e-26
Identity = 74/163 (45.40%), Postives = 92/163 (56.44%), Query Frame = -3
Query:  256 KFMDEYQAIMTKKLGLPKYNKQ---IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 735
            +F   + A+M  KLGL +  ++   +I +LL  MA   VDYT FFRAL        +P+      L+A   D      EA+ +W+  Y   L   G  D  R A M +VNPKYVLRNYL Q AI  AE  DF EV RL +L+ERP+DEQP ME YA LPP WA
Sbjct:  332 QFASCWTALMGAKLGLLETRREDLDLIERLLGLMAGSAVDYTRFFRALGRFHDPAWLPD------LRAAFRD-----PEAFDAWLADYRARLGHEGREDAARLADMLAVNPKYVLRNYLAQMAIAKAEQKDFSEVERLQRLLERPFDEQPEMEAYAALPPDWA 483          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y9953_RHOBA (UPF0061 protein RB9953 OS=Rhodopirellula baltica GN=RB9953 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.474e-24
Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = -3
Query:  244 KFMDEYQAIMTKKLGLPKYNKQ----IISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLL----------DIGKERKEAWISWVLSYIQELLSSG---ISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA-YRPG 735
            +F   + ++M  KLGL KY  +    ++  LL  + + + D T F+R L++++      E  + + L AVL           ++ +E ++A + W+ SY   +L+       D +R+  MN+VNPKYVLRNYL Q AIDA + GD   V  LL+++ RPYD+QPG E++A   P WA +RPG
Sbjct:  353 EFQKSWHSMMAGKLGLSKYESETDDELVDSLLTLLQLAETDMTIFYRRLADIELGTR--EQPVTLELAAVLRHLSEAHYVADEVTEEYQQALMDWMRSYQSRVLADDGFPAEDSQRRQRMNAVNPKYVLRNYLAQLAIDACDKGDDSLVSELLEVLRRPYDDQPGKERFAEKRPEWARHRPG 532          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y444_PSEPF (UPF0061 protein Pfl01_0444 OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pfl01_0444 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = -3
Query:  259 FMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEE-RKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F   Y  +M ++LG       ++ ++ +LL  M    VDYT FFR L    A+ ++        L+   +DI     + + +W   Y+  +   G +D+E R+A M++VNP Y+LRNYL Q AIDAAE GD+ EVRRL  ++  P++EQPGME YA  PP W
Sbjct:  327 FQAHYLDLMRRRLGFTTAEDDDQMLLEQLLQLMQNSGVDYTLFFRRLGEESAEQAVAR------LRDDFVDI-----KGFDAWGERYVARVARDGATDQEQRRARMHAVNPLYILRNYLAQKAIDAAEQGDYSEVRRLHAVLSNPFEEQPGMESYAERPPEW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y909_VIBPA (UPF0061 protein VP0909 OS=Vibrio parahaemolyticus GN=VP0909 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  259 KFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ---ELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 735
            +   ++  +M  KLGL      + ++   +   +  +  DYT FFRALSN+   P+          + + L I +E  +AW+   L+  +   + +   IS E+R   M   NPKY+LRNYL Q AID AE GDF EV RL +++  PYD QP  E YA+LPP W
Sbjct:  324 RLSQQFSRLMRSKLGLKTKIAEDGRLFESMFELLNQNHTDYTRFFRALSNLDKQPA---------QEVIDLFIDREAAQAWLDLYLARCELEVDEIGEPISAEQRSEQMRQTNPKYILRNYLAQLAIDKAEEGDFSEVHRLAEILRHPYDSQPEFEAYAKLPPEW 479          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y485_PSE14 (UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=PSPPH_0485 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 67/166 (40.36%), Postives = 99/166 (59.64%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGLP---KYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGI-SDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + ++Q++S+LL  M    VDYT FFR L +       P  E L  L+   +DI     + +  W  +Y+  +   G  +++ER+  M++VNP Y+LRNYL Q+AI AAE GD+ EVRRL +++  P+ EQPGME YA+ PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLTIAQEQDEQLVSQLLKLMQNSGVDYTLFFRRLGDQ------PAAEALRTLRDDFVDI-----KGFDGWAEAYLARIAGEGKGTEQERQTRMHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMEGYAQRPPDW 477          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y3881_PSEU5 (UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3881 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.841e-23
Identity = 60/158 (37.97%), Postives = 88/158 (55.70%), Query Frame = -3
Query:  259 EYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 723
            E+  +M ++LG  +    + ++I +LL  M    VDYT FFR L    A+ ++        L+   +D+     + + +W   Y       G     R+A M++VNPKY+LRNYL Q AI+AAE GD+  VR L  ++ RP+DEQPGME+YA  PP W
Sbjct:  330 EWLDLMRRRLGFSQAEDGDAELIRRLLQLMQGSAVDYTRFFRELGERPAEQAVQR------LREDFIDL-----QGFDAWAADYCARSAREGGDPVARQARMHAVNPKYILRNYLAQQAIEAAEKGDYAPVRELHAVLSRPFDEQPGMERYAERPPEW 476          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y683_TOLAT (UPF0061 protein Tola_0683 OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=Tola_0683 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 64/167 (38.32%), Postives = 98/167 (58.68%), Query Frame = -3
Query:  244 FMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA-YRPG 732
            F  E  A++  KLG  ++   + +++++L + +   +VD T FFR L+ V  D S P+  +L        D+  + + A+  W+ +Y Q +LS G+   ER A MN VNP YVLRNYL Q  IDAAE G++  +  LL+++ +PY EQ G E YA+  P WA ++PG
Sbjct:  348 FAQEMAAMLAAKLGWQQWLPEDSELVNRLFDLLQQAEVDMTLFFRRLALV--DVSAPDLTVLADA-FYRDDLFCQHQPAFTQWLTNYSQRVLSEGVLPAERAARMNQVNPVYVLRNYLAQQVIDAAEQGNYQPIAELLEVLRQPYTEQSGKEAYAQKRPDWARHKPG 511          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1411_VIBHB (UPF0061 protein VIBHAR_01411 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_01411 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 62/170 (36.47%), Postives = 89/170 (52.35%), Query Frame = -3
Query:  259 GKIGTKFMDEYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQ---ELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 750
            GK   +   ++  +M  KLGL      + ++   +   +  +K DYT FFR LSN+         ++  P   + L I +E   AW+   L+  +   +     +S + R   M   NPKY+LRNYL Q AID AE GDF EV RL +L++RPYDEQP  + Y +LPP W
Sbjct:  319 GKFEVRLSQKFSELMRAKLGLHTKVDEDGRLFEAMFELLNQNKADYTRFFRELSNL---------DVKSPQAVIDLFIDREAASAWVDLYLARCELEVDECGERVSAQTRCEKMRRTNPKYILRNYLAQIAIDKAEEGDFSEVNRLAELLKRPYDEQPEFDDYTKLPPEW 479          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y1574_AZOSB (UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH72) GN=azo1574 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = -3
Query:  256 EYQAIMTKKLGLPKY---NKQIISKLLNNMAVDKVDYTNFFRALSNV---KADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAWA 723
            E +A+   KLGL      +  ++  L   M   +VD T FFRAL+ V   K DP++  D      K +      E  E +  W+  Y       G+  ++R+A MN+ NP+YV+RNYL Q AIDAAE GD+G VR LL +M RPYDEQP    YA+  P WA
Sbjct:  351 ESRAMTAAKLGLAALADADLPMVDALHGWMKRAEVDMTLFFRALAEVDLLKPDPALFLDAFYDDAKRL------ETAEEFSGWLRLYADRCRQEGLDADQRRARMNAANPRYVMRNYLAQQAIDAAEQGDYGPVRSLLDVMRRPYDEQPERAAYAQRRPDWA 506          
BLAST of CN189422 vs. ExPASy Swiss-Prot
Match: Y6641_PSEAB (UPF0061 protein PA14_66410 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=PA14_66410 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.557e-23
Identity = 65/165 (39.39%), Postives = 95/165 (57.58%), Query Frame = -3
Query:  259 FMDEYQA----IMTKKLGL---PKYNKQIISKLLNNMAVDKVDYTNFFRALSNVKADPSIPEDELLVPLKAVLLDIGKERKEAWISWVLSYIQELLSSGISDEERKALMNSVNPKYVLRNYLCQSAIDAAELGDFGEVRRLLKLMERPYDEQPGMEKYARLPPAW 732
            F+  YQA    +M ++LGL    + ++ ++ +LL  M    VDY+ FFR L         PE   L  L+   +D     +EA+  W  +Y + +   G   E R+  M++VNP YVLRNYL Q AI+AAE GD+ EVR L +++ RP++EQPGME++ R PP W
Sbjct:  323 FLPLYQAHYLDLMRRRLGLGVAAENDQALVQELLQRMQGSAVDYSLFFRRLGE-----ETPE-RALASLRDDFVD-----REAFDRWAEAYRRRVEEEGGDQESRRRRMHAVNPLYVLRNYLAQQAIEAAEQGDYTEVRLLHQVLSRPFEEQPGMERFTRRPPDW 476          
The following BLAST results are available for this feature:
BLAST of CN189422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
Y1192_THISH2.842e-2645.40UPF0061 protein Tgr7_1192 OS=Thioalkalivibrio sp. ... [more]
Y9953_RHOBA3.474e-2436.26UPF0061 protein RB9953 OS=Rhodopirellula baltica G... [more]
Y444_PSEPF1.011e-2338.89UPF0061 protein Pfl01_0444 OS=Pseudomonas fluoresc... [more]
Y909_VIBPA1.320e-2336.97UPF0061 protein VP0909 OS=Vibrio parahaemolyticus ... [more]
Y485_PSE143.841e-2340.36UPF0061 protein PSPPH_0485 OS=Pseudomonas syringae... [more]
Y3881_PSEU53.841e-2337.97UPF0061 protein PST_3881 OS=Pseudomonas stutzeri (... [more]
Y683_TOLAT5.016e-2338.32UPF0061 protein Tola_0683 OS=Tolumonas auensis (st... [more]
Y1411_VIBHB5.016e-2336.47UPF0061 protein VIBHAR_01411 OS=Vibrio harveyi (st... [more]
Y1574_AZOSB6.552e-2340.74UPF0061 protein azo1574 OS=Azoarcus sp. (strain BH... [more]
Y6641_PSEAB8.557e-2339.39UPF0061 protein PA14_66410 OS=Pseudomonas aerugino... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001N08_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189422 ID=CN189422; Name=CN189422; organism=Citrus sinensis; type=EST; length=764bp
TTTTTTTTTTTTTTTAAATAAAAAATTGTAATAAATAAAATGATTTCGAA
ATGCATAAACTGTTAAAATTCTGCAAAGAAATAATGCCATACAAATTATT
TCTACTTTTTTCTGCAGCCACAAAAATAATAATAATAATAATGATTCGAC
TATTATATACATGAAGTTACAATCCTCTTTCTGGTATAGGTATAACATAA
TGCAGAGAATGGCAGATTACGATGAACAGGAAAGCATGCAAACACCTGGT
CGATAAGCCCATGCCGGGGGCAGGCGAGCATACTTTTCCATTCCTGGTTG
CTCGTCATATGGGCGTTCCATAAGTTTAAGCAACCTCCGCACCTCACCAA
AATCTCCGAGCTCAGCTGCATCGATAGCACTCTGGCACAAGTAGTTTCTA
AGAACATATTTTGGGTTCACAGAATTCATCAATGCCTTCCTTTCCTCATC
TGAGATGCCACTAGACAACAGCTCTTGTATGTACGATAACACCCAGCTGA
TCCATGCCTCCTTCCGCTCCTTTCCGATATCTAACAAAACAGCCTTCAGT
GGAACTAACAACTCATCCTCTGGAATGCTGGGATCAGCTTTGACATTGGA
AAGTGCACGAAAGAAATTTGTGTAATCAACTTTGTCAACAGCCATATTGT
TTAGAAGTTTACTAATAATCTGTTTATTGTATTTTGGAAGACCAAGTTTC
TTTGTCATAATGGCTTGATATTCATCCATAAACTTTGTTCCTATCTTTCC
ATGACATAATTTGC
back to top