CN189418

Overview
NameCN189418
Unique NameCN189418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9254 contig Csv1_Contig9254:769..1438. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23
Identity = 82/223 (36.77%), Postives = 121/223 (54.26%), Query Frame = 1
Query:   16 RHISGSNKKPRLPRQDEENTVGAYDSSIPN--GQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLIDN-IPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFH-VPSSAISEIQCSPCVSD--------SVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVDVSP 648
            R I  SNKK RLP+QD     G+ DS   +  GQIVK+QP +NEAAKAML +I+K++S  R E ++ N   FL++N +P+   L++  SS++ SGVTL+EVP NSG   ++T S    + S++  +IQC P V D        ++   P+  K+      D  +  FP LQ I +E  + IP   F + G     +L P   D ++ I+ D    + D    P
Sbjct:  232 RRIVASNKKRRLPKQD-----GSLDSESASLDGQIVKYQPMINEAAKAMLRKILKLDSSHRFE-SMGNSDNFLLENYMPNGQGLDSS-SSTRNSGVTLAEVPANSGLPYVATSSGLSAICSTSTPQIQC-PVVLDNGIPKEVPNMSAVPSVPKAVAPGPTDINILEFPDLQDIVAEENVDIPGGGFEMPGPEGVFSL-PEEGDDSVPIETDEILYNDDTQKLP 445          
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.401e-20
Identity = 78/225 (34.67%), Postives = 118/225 (52.44%), Query Frame = 1
Query:   13 SRHISGSNKKPRLPRQDEENTVGAYDSSIP--NGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLI-DNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPS--SAISEIQ------CSPCVSDSVK-----VNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSIDADAFSPDHDVD 639
            ++ I+  +KK R+ +QD E+     D S+   +GQIVK+QP +NEAAKAML ++ K++S  RLE   ++  +FLI D  P +NA     SS ++SGVTL EVPP SG+  ++T S     S   A SE+Q      CS  +++ +      V          S +D ++P   QLQGI  E+   +          G    +D  A++G M +D  + SP  D+D
Sbjct:  246 NKRIAEGSKKRRI-KQDIESQ----DPSVTPADGQIVKYQPGINEAAKAMLRELSKLDSSPRLENFSNSPESFLIGDGSPQSNA-----SSGRVSGVTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGEDLHPGSLSASDMIMPELSQLQGILPENNTDV---------IGCDSFMDTIAVEGKMGLDIGSLSPGADID 451          
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.033e-19
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 1
Query:   13 SRHISGSNKKPRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQ--LQGIASESTISIPDVNFVLSGNGNAENLDP--TALDGTMSIDADAFSPDHDVDVSP--DGIHKLP 669
            +R I GSNKK RLP  ++EN      + + N QIV++QPS+NEAA+ ML Q +  ++  R E   +N  +FL+ ++PS+ +++NG+ SS++SGVTL+E  PN+ QS  +      VP ++++                      H+     V PN  Q   QG A   + S P+ + V     + E  DP    LD +   + DA SP+ +  ++   +G+ KLP
Sbjct:  222 NRQIPGSNKKRRLPVDEQENRGDNVANGL-NRQIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDVPSSTSVDNGNPSSRVSGVTLAEFSPNTVQSATN-----QVPEASLA----------------------HHPQAGLVQPNIGQSPAQGAAPADSWS-PEFDLVGCETDSGECFDPIMAVLDES---EGDAISPEGEGKMNELLEGVPKLP 414          
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 76/227 (33.48%), Postives = 118/227 (51.98%), Query Frame = 1
Query:   13 SRHISGSNKKPRLPRQDEENTVGAYDSSIP--NGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLI-DNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPS--SAISEIQ------CSPCVSDSVK-----VNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDPTALDGTMSID--ADAFSPDHDVD 639
            ++ I+  +KK R+ +QD E+     D S+   +GQIVK+QP +NEAAKAML ++ K++S  RL+   ++  +FLI D  P +NA     SS ++SGVTL EVPP SG+  ++T S     S   A SE+Q      CS  +++ +      V          S +D ++P   QLQGI  E+   +          G    +D +A++G + +D      SP  D+D
Sbjct:  244 NKRIAEGSKKRRI-KQDIESQ----DPSVTPADGQIVKYQPGINEAAKAMLRELSKLDSSPRLDNFSNSPESFLIGDGSPQSNA-----SSGRVSGVTLQEVPPTSGKPLLNTASAIAGQSLLPATSEMQSSHLGTCSEIINNQLSNIIPLVGGEDLHPGSLSASDMIMPELSQLQGILPENNTDV---------IGCDSFMDTSAVEGKVGLDIIGSCLSPGADID 451          
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 65/205 (31.71%), Postives = 104/205 (50.73%), Query Frame = 1
Query:   13 SRHISGSNKKPRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLIDNIPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQCSPCVSDSVKVNPTQEKSKHNSGNDTVLPNFPQLQGIASESTISIPDVNFVLSGNGNAENLDP--TALDGTMSIDADAFS 621
            ++HIS SNKK RLP +D+ N+ G++  +  + QIV++Q SMN+A   ML QI +M++    E   SN  +FL+ ++P++N  +NG SS+    VTL++V  +S  +      ++H            PC     + N   E +   S  D +    P  QG A+  + S    + V     N E LDP    LDG + ++AD  +
Sbjct:  216 NQHISESNKKRRLPVEDQMNS-GSHGVNGLSRQIVRYQSSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGSSSNGSPEVTLADV--SSIPAGFYPAMKYH-----------EPC-----ETNQVMETNLPFSQGDLL----PPTQGAAASGSSS---SDLVGCETDNGECLDPIMAVLDGALELEADTLN 394          
BLAST of CN189418 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 1
Query:   13 SRHISGSNKKPRLPRQDEENTVGAYDSSIPNGQIVKFQPSMNEAAKAMLHQIMKMNSPSRLEPTISNLSTFLIDN-IPSANALENGHSSSQISGVTLSEVPPNSGQSNMSTESRFHVPSSAISEIQ-CSPCVSDSVKVNPTQEKSKH--NSGNDTVLPNFPQLQGIASESTISIPDVNFVLSG-NGNAENLDPTAL-DGTMSIDADAFSPDHDVD 639
            +R IS ++KK R  R   +  V   DS+ P+GQIVK+QP M+E AKAM  Q+MKM      EP  +    FL+ N   +    E   SS+Q+SG+TL E+P                     SEIQ  SP  +    V+   E +++   S +D  LP+F  +     E+    P  +F+     G++  LDP  L D ++S D D F  D D+D
Sbjct:  238 NRRISDTSKKRRFKR---DGIVRNNDSATPDGQIVKYQPPMHEQAKAMFKQLMKM------EPYKTGDDGFLLGNGTSTTEGTEMETSSNQVSGITLKEMP-------------------TASEIQSSSPIETTPENVSAASEATENCIPSPDDLTLPDFTHM---LPENNSEKPPESFMEPNLGGSSPLLDPDLLIDDSLSFDIDDFPMDSDID 421          
The following BLAST results are available for this feature:
BLAST of CN189418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HSFA1_ORYSJ2.320e-2336.77Heat stress transcription factor A-1 OS=Oryza sati... [more]
HSF8_SOLPE2.401e-2034.67Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1B_ARATH2.033e-1932.44Heat stress transcription factor A-1b OS=Arabidops... [more]
HSF8_SOLLC2.248e-1833.48Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA1E_ARATH1.781e-1531.71Heat stress transcription factor A-1e OS=Arabidops... [more]
HFA1D_ARATH5.181e-1533.49Heat stress transcription factor A-1d OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189418 ID=CN189418; Name=CN189418; organism=Citrus sinensis; type=EST; length=670bp
GCGTAACTAGTCTCCAGGCATATTTCTGGCAGCAACAAAAAACCGAGACT
GCCTAGGCAGGATGAAGAAAATACAGTTGGTGCATATGACTCCAGTATTC
CTAATGGTCAAATTGTCAAGTTCCAACCTTCAATGAATGAGGCAGCTAAA
GCAATGCTGCACCAGATCATGAAGATGAATTCACCTTCTAGGCTGGAACC
AACAATTAGCAACCTAAGCACTTTCCTGATTGATAATATTCCTTCTGCTA
ATGCATTGGAAAATGGGCACTCCTCCAGTCAAATTTCAGGAGTCACCCTT
TCAGAGGTTCCACCAAATTCTGGGCAGTCTAATATGTCCACAGAGTCAAG
GTTTCATGTCCCATCTAGTGCCATCTCAGAGATTCAATGTTCCCCTTGTG
TGAGTGACTCTGTGAAAGTAAATCCAACACAAGAGAAAAGTAAGCATAAT
TCTGGGAATGACACAGTTTTGCCCAACTTCCCTCAACTGCAAGGAATTGC
ATCAGAAAGCACTATTAGCATCCCTGATGTGAATTTTGTGTTGTCTGGAA
ACGGAAATGCAGAAAATTTGGATCCAACAGCTTTGGATGGAACAATGTCC
ATAGACGCTGATGCCTTTTCTCCTGATCATGATGTGGATGTTTCGCCAGA
TGGTATCCATAAGCTTCCAC
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