CN189411

Overview
NameCN189411
Unique NameCN189411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189411_ssr113 microsatellite CN189411_ssr113:113..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2729 contig Csv1_Contig2729:1..647. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189411 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.546e-61
Identity = 120/214 (56.07%), Postives = 146/214 (68.22%), Query Frame = 1
Query:    7 LHLYSVELDSLDKAVPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVIHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAR-EKDFVLDVGALEGHMCLM 645
            L LYSV+LDSLD      H P      TEVFGS NGL+ LSNS  D+A+FNP+TRQ+ +LP   IDLPD S  RG+VFYG G+D VSDDYKVVRMVQFK D +D LGC   YEVKVFSLK  SW R++ + + ++ +F FY+HLL+RRGYGV     +HWV PRRP     NLIV FDL LEEF ++  P   A    D  +D+G L+G +CLM
Sbjct:   63 LRLYSVDLDSLDSVSDVEH-PMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLM 275          
BLAST of CN189411 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.030e-41
Identity = 95/212 (44.81%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   13 LYSVELDSLDKAVPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFK-KDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVIHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLM 645
            L +VELDS +      H P      TEVFGS NG++ L NS  D+A+FNP+TR++ +LP+E ID P++   R +VFYG G+D V DD+KVVR+VQ K K+      C V  EVKVFSLK  SW RV  +  +      +Y+HLL RRGYGV VN  +HW+ PRR      N I+ +DL  ++  +L  P     E +  +D+G L+G +CLM
Sbjct:   65 LRTVELDSPENVSDIPH-PLQAGGFTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPV--EVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDN--MDIGVLDGCVCLM 271          
BLAST of CN189411 vs. ExPASy Swiss-Prot
Match: FBK50_ARATH (F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.374e-16
Identity = 63/189 (33.33%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   91 EVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVIHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGA----REKDFVLDVGALEGHMCLM 645
            E+ GS NGL+ +S  +  + L+NP T    +LP  +     +     F  YGFG D ++DDYK+V++V   +D  D           V+SLK  SW R+  L          Y H       GV+ NG IHWV           ++VAFD+  EEFR +P P+       R  +FV  VG+L G +C++
Sbjct:  164 EIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILD---------ASVYSLKADSWRRICNLN---------YEHNDGSYTSGVHFNGAIHWVFTESRH--NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFV--VGSLNGRLCVV 330          
BLAST of CN189411 vs. ExPASy Swiss-Prot
Match: FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 48/186 (25.81%), Postives = 90/186 (48.39%), Query Frame = 1
Query:   91 EVFGSCNGLLALS-NSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVIHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLM 645
            +V G+C+GL+    + D+ + L+NP  +   +L    ++  D  C+   V YGFG+D   DDYKVV ++Q +          V+ E K++S + + W      P+ +         +  +   G+Y+NG ++W +           I+++D+  +EF+ LP P    R   F + +G L G + ++
Sbjct:  111 QVVGTCHGLVCFHVDYDKSLYLWNPTIKLQQRLSSSDLETSDDECV---VTYGFGYDESEDDYKVVALLQQRHQ--------VKIETKIYSTRQKLWRSNTSFPSGV--------VVADKSRSGIYINGTLNWAATSSSS---SWTIISYDMSRDEFKELPGPVCCGR-GCFTMTLGDLRGCLSMV 273          
BLAST of CN189411 vs. ExPASy Swiss-Prot
Match: FB135_ARATH (F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 57/184 (30.98%), Postives = 95/184 (51.63%), Query Frame = 1
Query:   91 EVFGSCNGLLALSNS--DQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCF-----VEY---EVKVFSLKNR------SWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVIHWVS-PRR--PEFGIGNLIVAFDLGLEEFRLLPQPNYG 585
            +V GSCNGLL LS+S  +  + L+NP T    +LP       D+  +     +GFG   ++ +YKV+++V F+    +N G +     ++Y   EV++ +L ++      SW  + K P      ++F      +R     VNG +H+V+ PRR  P+       V+FDL  EEF+ +P+P+ G
Sbjct:  118 DVVGSCNGLLCLSDSLYNDSLYLYNPFTTNSLELPECSNKYHDQELV-----FGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWRSLGKAP------YKFV-----KRSSEALVNGRLHFVTRPRRHVPD----RKFVSFDLEDEEFKEIPKPDCG 281          
The following BLAST results are available for this feature:
BLAST of CN189411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FB233_ARATH1.546e-6156.07F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
FB244_ARATH3.030e-4144.81F-box protein At4g22390 OS=Arabidopsis thaliana GN... [more]
FBK50_ARATH3.374e-1633.33F-box/kelch-repeat protein At3g06240 OS=Arabidopsi... [more]
FBK67_ARATH6.585e-1225.81F-box/kelch-repeat protein At3g23880 OS=Arabidopsi... [more]
FB135_ARATH2.502e-1130.98F-box protein At3g07870 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N01_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189411 ID=CN189411; Name=CN189411; organism=Citrus sinensis; type=EST; length=647bp
AGGGGTTTGCATCTTTATTCCGTTGAGCTTGATTCACTCGATAAAGCTGT
CCCTTTTAACCACTACCCAGAAAGCATTTGGACTGGTACTGAAGTTTTTG
GTTCATGCAACGGCTTGCTTGCTTTATCTAATTCTGATCAAGATATCGCT
CTGTTTAATCCCGCTACTAGACAGCTGTTTAAGTTACCCGTTGAATATAT
TGATTTGCCCGACAAATCTTGTATTCGCGGTTTCGTCTTTTATGGTTTTG
GTCATGATCTTGTTAGTGATGATTATAAAGTTGTGAGGATGGTTCAGTTT
AAGAAAGATGAAGACGATAATCTTGGTTGCTTCGTCGAGTATGAAGTCAA
GGTTTTTAGTTTAAAAAATAGATCTTGGACGAGGGTTAAGAAATTGCCCA
ACTATCTTCGCTTTATGTTTCAATTTTACTTCCATCTTTTGCATAGAAGA
GGCTATGGTGTGTATGTCAATGGGGTTATACATTGGGTGTCTCCTCGTAG
GCCAGAGTTTGGAATTGGTAATTTGATTGTGGCTTTTGATCTTGGTCTTG
AAGAGTTTCGTCTATTGCCACAGCCCAATTATGGCGCTCGTGAGAAAGAT
TTTGTGTTGGACGTGGGTGCGCTGGAAGGACATATGTGTTTGATGTG
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