CN189409

Overview
NameCN189409
Unique NameCN189409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189409_ssr483 microsatellite CN189409_ssr483:483..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6022 contig Csv1_Contig6022:24..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.655e-60
Identity = 114/219 (52.05%), Postives = 149/219 (68.04%), Query Frame = 1
Query:   52 DFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVCCS 708
            DF+G P D++KTGGW +A +IL  E  ER+  +GI +NLVTYL G +HL +A +A  VTNF+                   RYLT+AIFA++ A GV +LT +T IP +RPP+C+     H  C +A+G QL +LY ALY  ALG GG+K++VSGFGSDQFD ++PKE   M +FFNRF+F I++GSL AV VLVYVQD+VGR WGYGI A  +V+  S
Sbjct:   17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH--CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALS 233          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.192e-39
Identity = 88/220 (40.00%), Postives = 128/220 (58.18%), Query Frame = 1
Query:   22 GEKDEAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGIS 681
            G+    +  VD RGN V +++TG W A   ++  E+ ER+   GIS NLV Y+   LH  + KS+  VTN++                   RY+T  I +++  LG+ LLT + S+P ++PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DPK++     FFN + F+I  G+ FA  VLVYVQDNVG   GYG+S
Sbjct:    7 GDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVEN--CEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLS 224          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.033e-39
Identity = 91/231 (39.39%), Postives = 122/231 (52.81%), Query Frame = 1
Query:   25 EKD--EAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVVCCSY 711
            EKD    +  VD   NP +K KTG W A   ILG E  ER+   G+  NLV YL   L+  +A +A  VTN+                    RY T+A F  +   G+ LLT + S+P ++P  C+            N  Q A+ + ALY IALG GGIK  VS FG+DQFD +D  E+     FFN FYF+I++G+L A  VLV++Q NVG GWG+G+    MV+   +
Sbjct:    3 EKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA------DTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCF 227          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 88/211 (41.71%), Postives = 119/211 (56.40%), Query Frame = 1
Query:   49 VDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQC-DDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGI 678
            VDF GNP  K KTG W A   ILG E  ER+   GI+ NL+TYL   LH  +  +AT VT +                    RY T+A F+ +  +G+  LT + S+P+++P +C  D+      C  A   Q AM +  LY IALG GGIK  VS FG+DQFD +D +E      FFN FYF+I+IG+L +  +LV++Q+N G G G+GI
Sbjct:   30 VDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDF------CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGI 234          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.542e-38
Identity = 85/219 (38.81%), Postives = 125/219 (57.08%), Query Frame = 1
Query:   22 GEKDEAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGI 678
            G+    +  VD +GNPV ++  G W A   ++  E+ ER+   GIS NL  Y+   LH  + KS+  VTN++                   RY+T  I  ++   G+ +LT + +IP ++PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DPKE+   + FFN + F+I  G+LFA  VLVYVQDNVG   GYG+
Sbjct:    7 GDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVEN--CEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGL 223          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.326e-35
Identity = 82/220 (37.27%), Postives = 118/220 (53.64%), Query Frame = 1
Query:   40 ENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVV 699
            +  +D    P +K KTG W A   ILGTE  ER+   G+S NL+ YL   +++ +  ++  V+N+                    RY T+A F  +   G+ LLT + S+P + P  C        +   A   Q A+ + ALY IALG GGIK  VS FG+DQFD +D KE+++   FFN FYF I++G++ A  VLV++Q NVG GWG G+    M +
Sbjct:   11 DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSG------ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAI 223          
BLAST of CN189409 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 59/209 (28.23%), Postives = 103/209 (49.28%), Query Frame = 1
Query:   76 KAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD-PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWGYGISAGTMVV 699
            K   GG +    I+  E  E++ + G+  N++ YL+ D     AK   ++  +                    R+LT++I +  + LG+ LL     +P ++P  CD      H C  +   QLA+LY+A   I++G GGI+     FG+DQ D  + PK E+ +  FF  +Y + ++  L A   +VY+Q+++G   G+G+ A  M++
Sbjct:   19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSH-CGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLI 226          
The following BLAST results are available for this feature:
BLAST of CN189409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CHL1_ARATH4.655e-6052.05Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3B_ARATH1.192e-3940.00Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR1_ARATH2.033e-3939.39Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH1.318e-3841.71Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH8.542e-3838.81Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR5_ARATH2.326e-3537.27Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2X_ARATH5.031e-2228.23Probable peptide transporter At1g52190 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189409 ID=CN189409; Name=CN189409; organism=Citrus sinensis; type=EST; length=723bp
GAGGTCTTGGTTGCATCTCATGGTGAAAAAGATGAAGCAGAAAATGTGGT
GGATTTCAGAGGGAATCCTGTTGATAAGGCCAAAACTGGTGGATGGCTAG
CTGCAGGCCTCATCTTAGGAACTGAACTCTCTGAAAGAATATGTGCTATG
GGCATATCAATGAACTTGGTGACATATTTGGTTGGCGATTTGCATTTATC
ATCGGCAAAATCTGCAACCATTGTCACCAACTTCATGGGAACACTAAATC
TTCTCGGTCTGCTTGGTGGTTTCTTAGCTGATGCAAAACTTGGCCGATAC
TTGACGGTCGCAATCTTTGCATCCGTCACTGCTTTGGGAGTGGGATTATT
GACATCGGCCACAAGCATTCCTAGCATGAGGCCTCCTCAATGTGATGATT
ACAGAAGAAAGCATCATCAATGCATTGAGGCAAACGGCAAGCAACTGGCT
ATGCTCTATGCAGCACTCTATACAATAGCACTTGGTGGTGGTGGAATAAA
ATCTAATGTCTCAGGCTTTGGCTCTGACCAATTCGACACATCAGACCCCA
AAGAAGAAAAGGCCATGATATTCTTCTTTAACAGATTTTATTTTGCCATT
AGCATAGGGTCTTTATTTGCTGTGATAGTTTTGGTCTATGTGCAAGATAA
TGTTGGAAGAGGCTGGGGATATGGTATTTCAGCAGGGACTATGGTAGTTT
GCTGCAGCTATATTGCTAATTGG
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