CN189408

Overview
NameCN189408
Unique NameCN189408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:854..1580. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.715e-78
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  273 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.715e-78
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM VHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  273 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 424          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.896e-77
Identity = 147/152 (96.71%), Postives = 149/152 (98.03%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEARARILQIHSRKM V+PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV HEDFNEGIIQVQAKKKASLNYYA
Sbjct:  272 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYYA 423          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 5.516e-77
Identity = 146/152 (96.05%), Postives = 149/152 (98.03%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD+RIKVIAATNRADILDPALMRSGRLDRKIE PHPSEEARARILQIHSRKM V+PDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV HEDFNEGIIQVQAKKK+SLNYYA
Sbjct:  278 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKSSLNYYA 429          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 286.574 bits (732), Expect = 9.409e-77
Identity = 146/152 (96.05%), Postives = 148/152 (97.37%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIE PHP+EEAR RILQIHSRKM V+ DVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
Sbjct:  272 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRILQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 423          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 6.326e-65
Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            +DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  288 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 6.326e-65
Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            +DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  288 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.404e-64
Identity = 122/152 (80.26%), Postives = 136/152 (89.47%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            +DAIGTKRFDSE +GDREVQRTMLELLNQLDGF  + ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAGM+ALRR ATE+ HED  EGI++VQAKKKA+L YYA
Sbjct:  291 LDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALRRGATELTHEDHMEGILEVQAKKKANLQYYA 442          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.193e-63
Identity = 120/152 (78.95%), Postives = 135/152 (88.82%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            +DAIG KRFDSE +GDREVQRTMLELLNQLDGF    ++KVIAATNR DILDPAL+RSGRLDRKIE P P+EEARARI+QIHSRKM V PDVN+EELAR TDDFNGAQ KAVCVEAG++ALRR ATE+ HED+ EGI++VQAKKKA+L YYA
Sbjct:  253 LDAIGNKRFDSEKAGDREVQRTMLELLNQLDGFQPTTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGIIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 404          
BLAST of CN189408 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.035e-63
Identity = 123/152 (80.92%), Postives = 134/152 (88.16%), Query Frame = -2
Query:  271 IDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA 726
            +DAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSD  IKVIAATNR DILDPAL+RSGRLDRKIE P P+EEARA ILQIHSRKM V  DVNF+ELARS++DFNGAQLKAVCVEAGM+ALRR  TE+ H DF EG ++V AKKK +L YYA
Sbjct:  270 LDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDANIKVIAATNRIDILDPALLRSGRLDRKIEFPLPNEEARAHILQIHSRKMNVSADVNFDELARSSEDFNGAQLKAVCVEAGMIALRRGGTELIHNDFVEGCVEVMAKKKKTLEYYA 421          
The following BLAST results are available for this feature:
BLAST of CN189408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 293
Match NameE-valueIdentityDescription
PS6AA_ARATH1.715e-7897.3726S protease regulatory subunit 6A homolog A OS=Ar... [more]
PRS6A_BRACM1.715e-7897.3726S protease regulatory subunit 6A homolog OS=Bras... [more]
PRS6A_SOLLC1.896e-7796.7126S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ5.516e-7796.0526S protease regulatory subunit 6A homolog OS=Oryz... [more]
PS6AB_ARATH9.409e-7796.0526S protease regulatory subunit 6A homolog B OS=Ar... [more]
PRS6A_RAT6.326e-6580.2626S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN6.326e-6580.2626S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_MOUSE2.404e-6480.2626S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA1.193e-6378.9526S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PRS6A_DICDI2.035e-6380.9226S protease regulatory subunit 6A homolog OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189408 ID=CN189408; Name=CN189408; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTTATGGTACCGTCGCATTTCCTTTCCATCAACATA
CATCCTCTAACACGAGTAAAAATATCTCAAGAGTAACAGTTTGACTTTCA
TCACATTAAAAAAAATTATCACGCGGCTGACTTGGGAGTTTCACTTCTTA
TTATAACATATTATGTACAGTACAAAGACAATGTTTAATACCCATTTTTT
AATATTCAACCCAAAATATATTAATTACCAATTGAAGTAGAGGCTAAAAC
TTCGCCTTTGGATGTGTCTATGCATAGTAGTTTAAGCTAGCCTTTTTCTT
AGCCTGCACCTGAATGATACCTTCATTGAAATCCTCATGGTTGACCTCAG
TCGCATCACGGCGAAGAGCAAGCATCCCTGCTTCAACACAAACAGCTTTT
AGTTGTGCCCCATTGAAATCGTCAGTGGATCGAGCAAGTTCTTCGAAGTT
GACATCCGGGTGAACAGTCATCTTCCTCGAATGGATTTGCAAAATGCGAG
CTCTAGCTTCCTCACTCGGATGTGGTAACTCGATCTTGCGATCCAAACGG
CCAGATCGCATAAGAGCAGGGTCCAGGATATCAGCACGATTTGTTGCTGC
TATGACCTTAATCCGATCATCGCTGCTAAATCCATCGAGCTGATTGAGCA
ACTCTAACATAGTTCGCTGCACCTCCCTGTCTCCACTCACTTCACTGTCA
AACCGCTTTGTACCAATTGCGTCAATT
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