EY676446

Overview
NameEY676446
Unique NameEY676446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length991
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676446_ssr19 microsatellite EY676446_ssr19:19..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 307.76 bits (787), Expect = 6.450e-83
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWEG 611
            H+RQ++ G+AIQLVLDQ++GCGFASKR+YLFGRVSMKIKL+PGDSAGTVTAFYMNS+T  VRDELDFEFLGNR+GQPY+VQTNI+A+GKGDREQRVNLWFDP+ DYH YTILW+H HIVFYVDDVPIR YKN  +    +P +QPMGVYSTLWEADDWATRGGLEKID SK PF    +   +            P NP  WWEG
Sbjct:   47 HIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDF-DIEGCPVPGPTFCPSNPHNWWEG 250          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 8.717e-80
Identity = 142/205 (69.27%), Postives = 164/205 (80.00%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKN--SGRAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWEG 611
            H+ QI GGRAIQL LD +SGCGFASK+QYLFGRVSMKIKL+PGDSAGTVTAFYMNS+T++VRDELDFEFLGNR+GQPYTVQTN++A+GKGDREQRVNLWFDP+ D+H Y I WNH  IVFYVD+VPIRVYKN  + + P+P  QPMGVYSTLWEADDWATRGG+EKI+ S+ PF    +   +            P N   WWEG
Sbjct:   46 HITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDF-DIEGCPVPGPADCPANSKNWWEG 249          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTHA_PHAAN (Xyloglucan endotransglucosylase/hydrolase protein A OS=Phaseolus angularis GN=XTHA PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.951e-63
Identity = 118/204 (57.84%), Postives = 141/204 (69.12%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWE 608
            H++ + GG  IQL LD+ +G GF SK  YLFG  SM IKLVPGDSAGTVTAFY++S T    DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVFYVDD PIRV+KNS      FP NQPM +Y++LW ADDWATRGGLEK D SK PF+   +     G     N +        WW+
Sbjct:   43 HIKYLNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMYIKLVPGDSAGTVTAFYLSS-TNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTTQYHRYSVLWNMYQIVFYVDDYPIRVFKNSNDLGVKFPFNQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIASYKGFHIDGCEASVNAKFCDTQGKRWWD 245          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.817e-62
Identity = 114/207 (55.07%), Postives = 143/207 (69.08%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWEGKK 617
            H++ + GG  + LVLD+ +G GF SK  YLFG  SM IK+V GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  G G+REQR+NLWFDP+ DYH Y++LWN + IVF+VDDVPIRV+KNS      FP NQPM +YS+LW ADDWATRGGLEK +  K PF+   +     G     N +        WW+ K+
Sbjct:   44 HIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFTGGAGNREQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGLEKTNWEKAPFVASYRGFHVDGCEASVNAKFCETQGKRWWDQKE 249          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH_TOBAC (Probable xyloglucan endotransglucosylase/hydrolase protein OS=Nicotiana tabacum GN=XTH PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 6.276e-62
Identity = 117/208 (56.25%), Postives = 141/208 (67.79%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*G--AAQFRNQQTVPRNPGTWWEGK 614
            H++ + GG  + LVLD++SG GF SK+ YLFG  SMK+KLV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN   IV +VDDVPIR +KNS      FP NQPM +YS+LW+ADDWATRGGLEK D S  PF          G  AA  +  Q        WW+ K
Sbjct:   44 HIKYLSGGSTVDLVLDRSSGAGFQSKKSYLFGHFSMKLKLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKGYHSYSVLWNTFQIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTDWSNAPFTASYTSFHVDGCEAATPQEVQVCNTKGMRWWDQK 250          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.071e-61
Identity = 115/204 (56.37%), Postives = 141/204 (69.12%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWE 608
            H++   GG  IQL LD+ +G GF SK  YLFG  SM IK+VPGDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP  +YH Y+ILWN + IVF+VD+VPIRV+KNS      FP +QPM +Y++LW ADDWATRGGLEK D SK PF+   +     G     N +        WW+
Sbjct:   45 HIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGCEASVNAKFCDTQGKRWWD 247          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 7.672e-60
Identity = 110/204 (53.92%), Postives = 138/204 (67.65%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWE 608
            H+  + GGR +QL LD+ +G GF ++  YLFG  SM IKLV GDSAGTVTAFY++S      DE+DFEFLGNRTGQPY +QTN+++ GKGDREQR+ LWFDP  DYH Y++LWN + I F+VDD PIRV+KNS      +P +QPM +YS+LW ADDWATRGG EK D SK PF+   +     G       +        WW+
Sbjct:   44 HIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSE-HDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGCEASAEAKFCATQGARWWD 246          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTHB_PHAAN (Probable xyloglucan endotransglucosylase/hydrolase protein B OS=Phaseolus angularis GN=XTHB PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.709e-59
Identity = 112/204 (54.90%), Postives = 137/204 (67.16%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*GAAQFRNQQTVPRNPGTWWE 608
            H++   GG  IQL LD+ +G GF +K  YLFG  SM IK+VPGDSAGTVTAF ++S      DE+DFEFLGNRTGQPY +QTN++  GKGDREQR+ LWFDP   YH Y++LWN + IVF VD++PIRV+KN       FP NQPM VY++LW ADDWATRGGLEK D SK PF+   +     G     N +        WW+
Sbjct:   44 HIKYFNGGSEIQLHLDKYTGTGFQTKGSYLFGHFSMNIKMVPGDSAGTVTAFCLSSQNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKELGVKFPFNQPMKVYNSLWNADDWATRGGLEKTDWSKAPFVAEYKGFHVDGCEASVNSRFCATQGKRWWD 246          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.808e-59
Identity = 112/208 (53.85%), Postives = 141/208 (67.79%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFLCLLQKI*N*G--AAQFRNQQTVPRNPGTWWEGK 614
            H++ + GG    L+LD++SG GF SK+ YLFG  SMK++LV GDSAG VTAFY++SN     DE+DFEFLGNRTGQPY +QTN++  GKG+REQR+ LWFDP   YH Y++LWN + IV +VDDVPIR +KNS      FP NQPM +YS+LW+ADDWATRGGLEK + +  PF          G  AA  +  Q        WW+ K
Sbjct:   45 HIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAE-HDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGCEAATPQEVQVCNTKGMKWWDQK 251          
BLAST of EY676446 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 3.970e-58
Identity = 104/175 (59.43%), Postives = 133/175 (76.00%), Query Frame = 3
Query:    3 HLRQIQGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGDREQRVNLWFDPAADYHLYTILWNHHHIVFYVDDVPIRVYKNSG--RAPFPMNQPMGVYSTLWEADDWATRGGLEKID*SKTPFL 521
            H +Q+ GG  +QL+LD+ +G GF SK  YLFG  SM IKL  GD+AG VTAFY++S T N  DE+DFEFLGNRTGQP  +QTN++  GKG+REQR+ LWFDP+  YH Y++LWN + IVF+VD++PIRV+KN+      FP NQPM +YS+LW ADDWATRGGLEK + +  PF+
Sbjct:   46 HQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSS-TNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFI 219          

HSP 2 Score: 23.0978 bits (48), Expect = 3.970e-58
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 1
Query:  517 FYAYYRKFEIEGLPSSGTSKLC 582
            F A YR F I+G  +S  +K C
Sbjct:  218 FIASYRGFHIDGCQASVEAKYC 239          
The following BLAST results are available for this feature:
BLAST of EY676446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH6_ARATH6.450e-8371.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH8.717e-8069.27Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHA_PHAAN1.951e-6357.84Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH5_ARATH2.817e-6255.07Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_TOBAC6.276e-6256.25Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_SOYBN1.071e-6156.37Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT7.672e-6053.92Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTHB_PHAAN1.709e-5954.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC3.808e-5953.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB3.970e-5859.43Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G06-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676446 ID=EY676446; Name=EY676446; organism=Citrus sinensis; type=EST; length=991bp
CCCATCTCAGGCAAATCCAGGGAGGGAGGGCCATCCAGCTAGTTCTAGAC
CAAAATTCAGGATGTGGGTTTGCCTCCAAAAGGCAGTACTTGTTCGGGCG
TGTAAGCATGAAGATCAAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCA
CTGCATTTTATATGAATTCCAACACCGAAAATGTGAGAGACGAGCTTGAT
TTTGAGTTCCTGGGAAACCGAACGGGTCAGCCTTACACGGTCCAGACCAA
TATCTATGCAAATGGAAAAGGCGATAGAGAACAGAGAGTGAACCTCTGGT
TTGACCCTGCTGCAGATTATCACCTTTACACTATTCTCTGGAACCATCAC
CATATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAG
TGGAAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCAACGC
TGTGGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGAT
TGAAGCAAAACTCCTTTTTTATGCTTATTACAGAAAATTTGAAATTGAGG
GGCTGCCCAGTTCCGGAACCAGCAAACTGTGCCTCGAAACCCAGGTACCT
GGTGGGAAGGCAAAAAAATAACCAAGCCCCTCCCCCCCCTGGGAAAACAA
AAAAAAAACAAAAAGGGGTTCCGTCCCCAACCCCCCTTGATTTTTGGATT
TTTTTGGCCCTGGATAAATCAAAAAACCCCCCGTTCCCCCCCCCCGGGAA
AGGCCCTTTGGCGGCCATAAAAAATTTTCAACCCCCCCCAATTTATATTT
AAACCTTTTGGGGGAGGGGGAACCCCCAAAACCCCCGTTTACTAAAAACC
ATGGGATATATTTATTTCCCCCCGTATCCCCCCCCCCTTTTTTTTTTATT
ATTTTTCCCCTATTTTTCTTTGGGGGAAAAAAAAAAAACATATTATACTC
ACCACCTAATTATAAGAGGGGGGGGGGGGGGGGGGGGGGGG
back to top