CN189379

Overview
NameCN189379
Unique NameCN189379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:1..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189379 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.067e-24
Identity = 72/195 (36.92%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  139 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNG-DDCKNK---KKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSE 708
            +FL   VP +++ ++ V + DV I++++ L  R+Y P +        D +N    + +P+I+ FHGG F  S A+  +Y  +  +L     A+ VSV  RRAPE+R P A+DDG+  L W+ S          ++WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE
Sbjct:   47 EFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS----------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESE 228          
BLAST of CN189379 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.742e-22
Identity = 70/197 (35.53%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  139 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSE 708
            ++L   V  +++ +D V + DV I++   L  R+Y P    +       + +K      +P+IL FHGG F  S A+  +Y  +  +L      + VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG+   S + V G I ++P F   ER++SE
Sbjct:   47 EYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE---SGIDVLGNILLNPMFGGNERTESE 230          
BLAST of CN189379 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 73/211 (34.60%), Postives = 105/211 (49.76%), Query Frame = 1
Query:   97 DGSVDRTWTGPPEVKFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKK-------LPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSE 708
            DGS +R        +FL   VP +S  +D V + D  ++  + L  RIY P  +            K       +P+++ FHGG F  S A+  +Y     +L      + VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +     ++V G I +HP F  QER++SE
Sbjct:   38 DGSFNRDLA-----EFLDRKVPANSFPLDGVFSFD-HVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATN---EGVKVLGNILLHPMFGGQERTQSE 230          
BLAST of CN189379 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.243e-21
Identity = 70/207 (33.82%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  139 KFLSEPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGD-----------------DCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSE 708
            ++L   VP ++  ++ V++ D  I++  GL VRIY         GD                 D    +  P+I+ FHGG F  S A   +Y  +  +  K    + VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D     ++V G I ++  F   ER++SE
Sbjct:   47 EYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAA----EGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAAD---EGVKVCGNILLNAMFGGTERTESE 237          
BLAST of CN189379 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.208e-11
Identity = 61/205 (29.76%), Postives = 96/205 (46.83%), Query Frame = 1
Query:  136 VKFLS--EPVPPHSDFIDSVATHDVTINKESGLRVRIYSPEEIKKLNGDDCKNKKKLPIILHFHGGGFCVSQADWYMYYHVYTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAAR-AGDADLSPLRVAGAIPIHPGFLRQERS-KSELENPQSPLLT 738
            VKFL+  + VPP SD  ++V   + T N    + VR+Y P+          K+K     + + HGGG+CV  A    Y  +  + A  +  + VS   R APE+  P  F+D ++AL W     + +            VD +RV + GDS+GGN+   VA +   D D+  +++     I+P     +    S  EN Q P+L+
Sbjct:   61 VKFLTSFQEVPPTSD--ENVTVTETTFNN---VPVRVYVPKR---------KSKTLRRGLFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLRQDVLEKYG---------VDPERVGVSGDSAGGNLAAAVAQQLIKDPDVK-IKLKTQSLIYPALQTLDMDLPSYRENAQFPILS 241          
The following BLAST results are available for this feature:
BLAST of CN189379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH5.067e-2436.92Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH4.742e-2235.53Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH8.089e-2234.60Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ5.243e-2133.82Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT2.208e-1129.76Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189379 ID=CN189379; Name=CN189379; organism=Citrus sinensis; type=EST; length=816bp
GAGGATTAAACACACCCAACACTCAACTAGGTAGCTATGGTGAACGATGG
AAGAGCAATAGTGGATGAAGTGTCCGGTTGGCTAAGAGTCTACAGCGACG
GTTCAGTTGATCGAACATGGACCGGACCACCGGAGGTCAAGTTCTTGTCC
GAACCGGTGCCACCCCACAGTGACTTTATTGACAGTGTCGCCACCCACGA
CGTAACCATCAACAAAGAATCCGGCCTCCGTGTCCGAATTTATTCACCGG
AGGAGATCAAGAAACTTAATGGTGATGATTGCAAGAACAAGAAGAAGCTA
CCAATCATCCTTCACTTTCATGGGGGTGGTTTTTGCGTTAGCCAAGCTGA
TTGGTACATGTACTATCACGTTTACACGAAGCTTGCAAAATCTGTCCCGG
CTATCTGTGTCTCCGTCTATCTCCGGCGGGCCCCGGAGCACCGCCTCCCG
GCCGCTTTCGACGATGGTTTCGAAGCCCTCCTTTGGCTCCGGTCACTATC
ACTGGCTCAGGCTCAGGCTCGGGAGAATAATTGGCTGACTGAACATGTGG
ATTTTCAACGCGTCTTCCTCATTGGAGACAGCTCCGGAGGGAACGTAGTG
CATGAAGTGGCGGCACGTGCAGGTGACGCGGACTTGAGCCCGTTGCGTGT
GGCCGGAGCGATTCCGATTCATCCGGGTTTCCTCCGGCAGGAAAGGAGCA
AGTCGGAGTTGGAAAACCCGCAGTCACCTCTTCTGACTTCTGGACATGGT
GGACAAGTTCTTGAGCTTTGCCCTGCCGTTGAACAGCGACCAGGGGCATC
CGTACACCTGTCCAAT
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