CN189378

Overview
NameCN189378
Unique NameCN189378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2728 contig Csv1_Contig2728:366..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 83/211 (39.34%), Postives = 116/211 (54.98%), Query Frame = -2
Query:  108 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 725
            +Y  L + +  +C    VSV  RRAPE+R P A+DDG+  L W+ S S          WL    D + R+FL GDSSGGN+VH VA RA +   S + V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P GP +  ++GL  P  L+ VAG DLI+D +++Y E +KKAG++V+LL        FYL
Sbjct:  124 IYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321          
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28
Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = -2
Query:  141 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 725
            +Y    + +  IC    VSV  RR+PEHR P A+DDG+ AL W++S    Q+    N +         V+L GDSSGGN+ H VA RA +  +   +V G I +HP F  QER++SE        +T+   D +    LP   D+ HP   P GP    + G+  P  L+ VAG DL++D ++ Y + +KK G +V LL
Sbjct:  126 IYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312          
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 78/211 (36.97%), Postives = 112/211 (53.08%), Query Frame = -2
Query:  108 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 725
            +Y  L + +  +C    VSV  RRAPE+  P A+DDG+ AL W+ S S          WL    D +  +FL GDSSGGN+ H VA RAG++ +    V G I ++P F   ER++SE        +T+   D +    LP   D+ HP   P  P    ++G+  P  L+ VAG DLI+D ++ Y E +KKAG++V+L+        FYL
Sbjct:  126 IYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323          
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = -2
Query:  108 YTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 722
            + KL+K V    VSV  RRAPEHR P A+DDG+ AL W+ S    ++               RVFL GDSSGGN+ H VA RA D  +   +V G I ++  F   ER++SE        +TL   D +    LP ++D+ HP   P GP    + GL     L+ V+G DL  D ++ Y +A+++ G  V+++        FYL
Sbjct:  141 FVKLSKGV---VVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330          
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: YKN2_SCHPO (AB hydrolase superfamily protein B1A11.02 OS=Schizosaccharomyces pombe GN=SPAPB1A11.02 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 58/203 (28.57%), Postives = 94/203 (46.31%), Query Frame = -2
Query:  108 ICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAG---AIP--IHPGFLRQE---RSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 692
            +CVSV  R APE + P A +D  ++  W+ S ++ +  A            +  FL G S+GGN V  ++  A D  + P  + G    +P  IHP  L +E   + +S  E   +P++T  ++D F     P       P +  + P   P     LPP      G D ++D  + Y +A+K AG +  L+V  G+ H F++
Sbjct:  123 VCVSVDYRLAPESKFPVAHNDAIDSFKWVAS-NIEKLGANPK---------RGFFLGGASAGGNFVSVLSHIARDEKIKP-ELTGLWHMVPTLIHPADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPT------PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWV 308          
The following BLAST results are available for this feature:
BLAST of CN189378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GI1L3_ARATH2.271e-3039.34Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH6.184e-2837.19Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH8.077e-2836.97Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GID1_ORYSJ2.432e-2436.10Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
YKN2_SCHPO4.027e-1128.57AB hydrolase superfamily protein B1A11.02 OS=Schiz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189378 ID=CN189378; Name=CN189378; organism=Citrus sinensis; type=EST; length=729bp
CCCTTTATTGATATTGATCAGTGCTTCCTCATAAACTCCGCTATTCCTTG
AAAAAGACTACAAGTTTGAGCAGCAGTGTTTGGGTCCATATCGACTGCAA
TCTTGTCGAGATAAAAACTGTGACCCATTCCAGGATTCACCAACAACTCC
ACATCCTTTCCAGCCTTTTTCATGGCTTCATAATATTCCATCTCAGTGTC
CTTAATCAAGTCATTACCCGCCACGCACAGCAGAAACGGAGGCAGCTTCA
GACCGTCGATCGGCGACGCAGCCGGCCCCATTGGACAGGTGTACGGATGC
CCCTTGTCGCTGTTCAACGGCAGGGCAAAGCTCAAGAACTTGTCCACCAT
GTCCAGAGTCAGAAGAGGTGACTGCGGGTTTTCCAACTCCGACTTGCTCC
TTTCCTGCCGGAGGAAACCCGGATGAATCGGAATCGCTCCGGCCACACGC
AACGGGCTCAAGTCCGCGTCACCTGCACGTGCCGCCACTTCATGCACTAC
GTTCCCTCCGGAGCTGTCTCCAATGAGGAAGACGCGTTGAAAATCCACAT
GTTCAGTCAGCCAATTATTCTCCCGAGCCTGAGCCTGAGCCAGTGATAGT
GACCGGAGCCAAAGGAGGGCTTCGAAACCATCGTCGAAAGCGGCCGGGAG
GCGGTGCTCCGGGGCCCGCCGGAGATAGACGGAGACACAGATAGCCGGGA
CAGATTTTGCAAGCTTCGTGTAAACGTGA
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