CN189378
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30 Identity = 83/211 (39.34%), Postives = 116/211 (54.98%), Query Frame = -2 Query: 108 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 725 +Y L + + +C VSV RRAPE+R P A+DDG+ L W+ S S WL D + R+FL GDSSGGN+VH VA RA + S + V G I ++P F ER++SE +T+ D + LP D+ HP P GP + ++GL P L+ VAG DLI+D +++Y E +KKAG++V+LL FYL Sbjct: 124 IYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----------WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE---SRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYL 321
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.184e-28 Identity = 74/199 (37.19%), Postives = 106/199 (53.27%), Query Frame = -2 Query: 141 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELL 725 +Y + + IC VSV RR+PEHR P A+DDG+ AL W++S Q+ N + V+L GDSSGGN+ H VA RA + + +V G I +HP F QER++SE +T+ D + LP D+ HP P GP + G+ P L+ VAG DL++D ++ Y + +KK G +V LL Sbjct: 126 IYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVY---------VYLAGDSSGGNIAHNVAVRATNEGV---KVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLL 312
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28 Identity = 78/211 (36.97%), Postives = 112/211 (53.08%), Query Frame = -2 Query: 108 VYTKLAKSVPAIC----VSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQ-RVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 725 +Y L + + +C VSV RRAPE+ P A+DDG+ AL W+ S S WL D + +FL GDSSGGN+ H VA RAG++ + V G I ++P F ER++SE +T+ D + LP D+ HP P P ++G+ P L+ VAG DLI+D ++ Y E +KKAG++V+L+ FYL Sbjct: 126 IYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYL 323
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24 Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = -2 Query: 108 YTKLAKSVPAICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAGAIPIHPGFLRQERSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 722 + KL+K V VSV RRAPEHR P A+DDG+ AL W+ S ++ RVFL GDSSGGN+ H VA RA D + +V G I ++ F ER++SE +TL D + LP ++D+ HP P GP + GL L+ V+G DL D ++ Y +A+++ G V+++ FYL Sbjct: 141 FVKLSKGV---VVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQ---------ARVFLSGDSSGGNIAHHVAVRAADEGV---KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYL 330
BLAST of CN189378 vs. ExPASy Swiss-Prot
Match: YKN2_SCHPO (AB hydrolase superfamily protein B1A11.02 OS=Schizosaccharomyces pombe GN=SPAPB1A11.02 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 58/203 (28.57%), Postives = 94/203 (46.31%), Query Frame = -2 Query: 108 ICVSVYLRRAPEHRLPAAFDDGFEALLWLRSLSLAQAQARENNWLTEHVDFQRVFLIGDSSGGNVVHEVAARAGDADLSPLRVAG---AIP--IHPGFLRQE---RSKSELENPQSPLLTLDMVDKFLSFALPLNSDKGHPYTCPMGPAASPIDGLKLPPFLLCVAGNDLIKDTEMEYYEAMKKAGKDVELLVNPGMGHSFYL 692 +CVSV R APE + P A +D ++ W+ S ++ + A + FL G S+GGN V ++ A D + P + G +P IHP L +E + +S E +P++T ++D F P P + + P P LPP G D ++D + Y +A+K AG + L+V G+ H F++ Sbjct: 123 VCVSVDYRLAPESKFPVAHNDAIDSFKWVAS-NIEKLGANPK---------RGFFLGGASAGGNFVSVLSHIARDEKIKP-ELTGLWHMVPTLIHPADLDEETMAQFRSYKETIHAPVITPKIMDIFFENYQPT------PKSPLVNPLYYPTGHKDLPPSFFQCCGWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWV 308 The following BLAST results are available for this feature:
BLAST of CN189378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189378 ID=CN189378; Name=CN189378; organism=Citrus sinensis; type=EST; length=729bpback to top |