CN189374

Overview
NameCN189374
Unique NameCN189374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1790 contig Csv1_Contig1790:875..1537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: YK17_SCHPO (Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe GN=SPAPB1A10.07c PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.262e-15
Identity = 56/172 (32.56%), Postives = 81/172 (47.09%), Query Frame = -2
Query:  180 YCMYLCYSGLSSEPRDYECNGLHRHSKAVYTGSLTLGLITTVLSVVYSAVRAGXXXXXXXXXXXPRA-----GGGKPLLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGWST-SVGESGK---LVDVG--WPSVWVRILTGWATAALYMWSLVAPILFPDR 662
            Y  YL  S L++ P + +CN     +      S  +G   T  +++YSAVRA              A     G   PL                   Y++ +FHI+F LA+ Y+A LLT W+T SV E+ K    V +G  + +VWV+I+T W    LY+WS +AP+ FP R
Sbjct:  273 YTCYLILSALANRPDEGQCNPWGNSASGTREFSKVIGAAFTFFTILYSAVRAASSRESDDSYSYLYADSHDMGVSTPL------EDGSSEEDKHQSDYNFIWFHIVFVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYVWSCLAPVFFPYR 438          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERIC_DICDI (Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 53/172 (30.81%), Postives = 77/172 (44.77%), Query Frame = -2
Query:  180 YCMYLCYSGLSSEPRDYECNGLHRHSKAVYTGSLTLGLITTVLSVVYSAVRAGXXXXXXXXXXXPRAGGGKPLLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGW-----------STSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDR 662
            YC YL YS ++SEP    C+  +  S    T  + +G + T++SV YSA R+              +    P                    Y+Y+FFH  F+  +MY + LLT W           STS   S   VD G  SVWV++++ W    LY+W+L+ PIL  +R
Sbjct:  250 YCTYLIYSAINSEPPG-TCSSNNTSSPKEST--IIIGAVFTIISVCYSAFRSSDSTELLGNHNHYSSIPTDPNAETTGVADDECEC----TAYNYSFFHFTFACGAMYLSALLTNWATMTSTDITSSSTSSSNSTISVDSGMVSVWVKVVSSWVVVLLYLWTLIGPILLRNR 414          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC2_MOUSE (Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = -2
Query:  174 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 392
            VTYSY+FFH    LAS++  M LT W  S GE+ K++   W SVWV+I   WA   LY+W+LVAP+L P+R+F
Sbjct:  379 VTYSYSFFHFCLVLASLHVMMTLTNWY-SPGETRKMIST-WTSVWVKICASWAGLFLYLWTLVAPLLLPNRDF 449          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERIC_NEMVE (Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 54/189 (28.57%), Postives = 79/189 (41.80%), Query Frame = -2
Query:  174 YCMYLCYSGLSSEPRDYECNGLHRH--SKAVYTGSLTLGLITTVLSVVYSAVRAGXXXXXXXXXXXPRAGGGKP------------------------LLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 662
            Y +YL +S LS +P D  CNG +    + A       +G+I   + VVY++VR              + G   P                        L+                V YSY+F+H +  LAS+Y  M LT W   VG     +     +VWV+I + W    +Y+W+L+AP LFPDR+F
Sbjct:  274 YTVYLTWSALSFQP-DKNCNGFYETHITLAGMDSQAIIGVILMFVMVVYASVRTASSSQVG------KLGMSSPKHSSALDKETTVLSEGDETRSDVGLVEEGGEGRRVYDDEDGGVAYSYSFYHFMLMLASLYIMMTLTNWYKPVGSDFSKLQYSETAVWVKIASSWLCQLIYIWTLLAPALFPDRDF 455          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC2_BOVIN (Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = -2
Query:  174 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 392
            VTYSY+FFH+   LAS++  M LT W    GE+ K++   W +VWV+I   W    LY+W+LVAP+L P+R+F
Sbjct:  381 VTYSYSFFHLCLVLASVHIMMTLTNWYRP-GETRKMIST-WTAVWVKICASWTGLLLYLWTLVAPLLLPNRDF 451          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERIC_MONBE (Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.118e-13
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = -2
Query:  174 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 392
            V YS++FFH+ F++A++Y  M+LT W +S  ++   +  GW SVWV++++ W    LY W+++AP+  PDR+F
Sbjct:  412 VRYSWSFFHLTFAVAALYLMMVLTEWDSS--DADVRIGKGWASVWVQVVSSWVIFLLYGWTMMAPVCLPDRDF 482          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC2_HUMAN (Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.717e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = -2
Query:  174 VTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 392
            VTYSY+FFH    LAS++  M LT W    GE+ K++   W +VWV+I   WA   LY+W+LVAP+L  +R+F
Sbjct:  385 VTYSYSFFHFCLVLASLHVMMTLTNWYKP-GETRKMIST-WTAVWVKICASWAGLLLYLWTLVAPLLLRNRDF 455          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC1_BOVIN (Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 56/186 (30.11%), Postives = 81/186 (43.55%), Query Frame = -2
Query:  174 YCMYLCYSGLSSEPRDYECN-------GLHRHSKAVYTGSLT--------LGLITTVLSVVYSAVRAGXXXXXXXXXXXP------RAGGGKP--LLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 662
            Y MYL +S +++EP + ECN       G +  S     G           +GLI  +L V YS++R                      GG +    L                VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  270 YTMYLTWSAMTNEP-ETECNPSLLNIIGYNTTSTVSKEGQSVQWWHTQGIIGLILFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGGARNDGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC1_PONAB (Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 55/186 (29.57%), Postives = 80/186 (43.01%), Query Frame = -2
Query:  174 YCMYLCYSGLSSEPRDYECN-------GLHRHSKAVYTGSLT--------LGLITTVLSVVYSAVRAGXXXXXXXXXXXP------RAGGGKP--LLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 662
            Y MYL +S +++EP +  CN       G +  S     G           +GLI  +L V YS++R                      GG +    L                VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  270 YTMYLTWSAMTNEP-ETNCNPSLLSIIGYNTTSTVPKEGQSVQWWHAQGIIGLILFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGGARSDGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452          
BLAST of CN189374 vs. ExPASy Swiss-Prot
Match: SERC1_HUMAN (Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 55/186 (29.57%), Postives = 80/186 (43.01%), Query Frame = -2
Query:  174 YCMYLCYSGLSSEPRDYECN-------GLHRHSKAVYTGSLT--------LGLITTVLSVVYSAVRAGXXXXXXXXXXXP------RAGGGKP--LLPMXXXXXXXXXXXXKPVTYSYAFFHIIFSLASMYSAMLLTGWSTSVGESGKLVDVGWPSVWVRILTGWATAALYMWSLVAPILFPDREF 662
            Y MYL +S +++EP +  CN       G +  S     G           +GLI  +L V YS++R                      GG +    L                VTYSY+FFH +  LAS+Y  M LT W     E  + +   W +VWV+I + W    LY+W+LVAP++  +R+F
Sbjct:  270 YTMYLTWSAMTNEP-ETNCNPSLLSIIGYNTTSTVPKEGQSVQWWHAQGIIGLILFLLCVFYSSIRTSNNSQVNKLTLTSDESTLIEDGGARSDGSLEDGDDVHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYRY--EPSREMKSQWTAVWVKISSSWIGIVLYVWTLVAPLVLTNRDF 452          
The following BLAST results are available for this feature:
BLAST of CN189374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YK17_SCHPO2.262e-1532.56Membrane protein PB1A10.07c OS=Schizosaccharomyces... [more]
SERIC_DICDI3.859e-1530.81Probable serine incorporator OS=Dictyostelium disc... [more]
SERC2_MOUSE8.597e-1552.05Serine incorporator 2 OS=Mus musculus GN=Serinc2 P... [more]
SERIC_NEMVE1.466e-1428.57Probable serine incorporator OS=Nematostella vecte... [more]
SERC2_BOVIN9.505e-1447.95Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=... [more]
SERIC_MONBE2.118e-1341.10Probable serine incorporator OS=Monosiga brevicoll... [more]
SERC2_HUMAN4.717e-1347.95Serine incorporator 2 OS=Homo sapiens GN=SERINC2 P... [more]
SERC1_BOVIN6.161e-1330.11Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=... [more]
SERC1_PONAB1.793e-1229.57Serine incorporator 1 OS=Pongo abelii GN=SERINC1 P... [more]
SERC1_HUMAN1.793e-1229.57Serine incorporator 1 OS=Homo sapiens GN=SERINC1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189374 ID=CN189374; Name=CN189374; organism=Citrus sinensis; type=EST; length=663bp
TTTTTTTTTTTTTTTAACTTTGAAAGCAATTCAATTCATACAACTTAGGA
TAGACAACATTTTTACAATTTTATGATAAGCAAGCATTCCAAACAGTATA
CGCTTAACCGTTAGGGAGCTGCATCACACATGCACAATATATATAGGGGT
ATTTAAAACATTTTTGGAATTCAGAACTCCCTGTCCGGGAACAGAATTGG
AGCAACCAGTGACCACATGTAGAGAGCTGCAGTTGCCCACCCGGTCAGAA
TCCTAACCCAGACAGATGGCCAACCCACGTCAACTAGCTTCCCACTCTCC
CCGACAGAGGTTGACCACCCAGTTAGAAGCATTGCAGAATACATGCTGGC
CAGAGAGAAAATAATGTGGAAGAAAGCATATGAATATGTGACTGGCTTGG
CCTTTTCCTTTTCTTCTACCTCATCGGCCTTGTCCATTGGAAGCAGAGGC
TTCCCGCCACCTGCACGAGGTGAACTTGGTGGTGAAAGCAGAGTTGTAGA
AGATCCAGCACGCACTGCAGAATATACTACTGATAGGACAGTGGTAATCA
GGCCCAAGGTAAGGCTGCCAGTATAGACAGCTTTAGAATGCCTGTGGAGA
CCATTGCATTCATAATCTCTTGGTTCACTTGAAAGTCCACTGTAACAGAG
GTACATGCAGTAA
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