CN189372

Overview
NameCN189372
Unique NameCN189372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length445
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6203 contig Csv1_Contig6203:823..1267. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189372 vs. ExPASy Swiss-Prot
Match: Y4967_ARATH (Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.699e-34
Identity = 65/107 (60.75%), Postives = 87/107 (81.31%), Query Frame = -2 
Query:  127 ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 444
            A GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV  PSEH V T++PQEACMVREF+RLV  IK NG+KP+  WP ISRKTQL++DAVK S+++ ++ I +
Sbjct:  253 AIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHTVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISL 359
The following BLAST results are available for this feature:
BLAST of CN189372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4967_ARATH5.699e-3460.75Uncharacterized oxidoreductase At4g09670 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189372 ID=CN189372; Name=CN189372; organism=Citrus sinensis; type=EST; length=445bp
TTTTGCAACCTTACTATGCTGAACATTGCCGAAGAATCTGGAAATCTTAT
TACAAATGCGTAAACAACACTCAAATTTTTAAGGAAAACACCCAATAGAG
CATAGTAGAAGCCTTATTTACCACTTAATCTCAATAGGCTCGAAACCTCT
TTCAATAGATGTCTTGACAGCATCAATAATTAGCTGTGTCTTCCTACTTA
TGATTGGCCACTTCTGCTCTGGCTTCGAACCATTTTTAATATTTGCAACC
AAGCGGGAAAACTCTCTCACCATGCAAGCTTCCTGAGGAATATCTGTGGT
TACGACGTGCTCACTTGGCAATGGCACCCATCCTGTCACAAGATCATTGA
AAAAGCATCTAGTATTTGTGAAATAAGAGGCCTCCTCCTCTCGGAAAGGA
ATGATGAAGTCATGAAGCTGCAGGGATCCGTTAGTTCCAGTAGCA
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