CN189371

Overview
NameCN189371
Unique NameCN189371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:127..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 9.437e-31
Identity = 61/148 (41.22%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  252 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G A+  DLLN+P+ +  +A +AF+A
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSA--TWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKA 237          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 65/158 (41.14%), Postives = 90/158 (56.96%), Query Frame = 3
Query:  219 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFE 692
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S ++  PC PG +Y+GRG I I +NYNYGA G A+  +LLN+P+ +  +A ++F+
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQW--PCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFK 155          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 3
Query:  252 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S ++  PC  G  YYGRG + + WNYNYG  G A+ +DLLN+P+ +  +  +AF+A
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEW--PCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKA 222          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 59/146 (40.41%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFE 692
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +Y  PC PG  YYGRG + + WNYNYG  GEAL+ +LL +P+ +  +  L+F+
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFK 152          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 61/148 (41.22%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKS 204          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.356e-28
Identity = 61/148 (41.22%), Postives = 84/148 (56.76%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKS 226          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 59/146 (40.41%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFE 692
            F+     RN       GF+ Y +FI A   +   GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC       +PC PG +YYGRG I +  NYNYG  G+A+K DL+N+P+ +  N T++F+
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSFN--GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFK 229          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKS 226          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 58/146 (39.73%), Postives = 85/146 (58.22%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFE 692
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG  Y+GRG I I WN+NYG  G+AL  D L +PE +   + +AF+
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQ 200          
BLAST of CN189371 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 59/147 (40.14%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  255 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEA 695
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++
Sbjct:   84 FDQVLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-AYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKS 225          
The following BLAST results are available for this feature:
BLAST of CN189371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CHIB_ARATH9.437e-3141.22Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHID_SOLLC1.363e-2941.14Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_BRANA1.363e-2940.54Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA1.507e-2840.41Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI2_GOSHI3.356e-2841.22Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI3.356e-2841.22Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIX_PEA6.330e-2740.41Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_PHAVU6.330e-2740.14Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI10_ORYSJ6.330e-2739.73Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI5_PHAVU8.267e-2740.14Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L24_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189371 ID=CN189371; Name=CN189371; organism=Citrus sinensis; type=EST; length=695bp
ATTTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGACATAATGAAG
ATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTACTGGC
ACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATAGTGA
AGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCCAACA
TGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGGTTTA
CCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACATGCCG
TGGGATTCTGGGATTATCAGTCTTTCATTACTGCCACCGTCAAATATCAG
CCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGGAGAT
TTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATATGGAG
TGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGAAATG
AGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATCCCTG
CACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATACTGGA
ACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGTTGAAT
CATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCT
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