CN189369

Overview
NameCN189369
Unique NameCN189369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10395 contig Csv1_Contig10395:22..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.825e-32
Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+EENKVAENSF+V+M+ KSK
Sbjct:    1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78          

HSP 2 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 2
Query:  575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706
            DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+
Sbjct:  172 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAF 215          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            MK+FVKTL G++FEIEVKP DKVSDVK  IETV+G++ YPA++QMLIHQGKVLKD TTLEEN V ENSF+V+ML+K+K
Sbjct:    1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77          

HSP 2 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 2
Query:  575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706
            DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+
Sbjct:  133 DVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAF 176          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            MK+ VKTLKG+ F+IEV    KV+DVK+ IET QG  +YPA QQMLIHQGKVLKD TTL+ENKV ENSF+V+ML + K
Sbjct:    1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78          

HSP 2 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2
Query:  575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706
            D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+
Sbjct:  143 DNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAF 186          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            MK+ VKTLKG+HFEI V P D +  VKKNIE  QG D YP  QQ+LIH GKVLKD T+L ENKV E  F+VVML+KSK
Sbjct:    1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          

HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 2
Query:  575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706
            D YGQAAS LV+GS+LE  VQQI++MGGGSWD+ETV RALRAAY
Sbjct:  133 DTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAY 176          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            MK+ VKTLKG+HFEI V P D +  VKKNIE  Q  D YP  QQ+LIH GKVLKD TTL ENKV E  F+VVML+KSK
Sbjct:    1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78          

HSP 2 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2
Query:  575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706
            D YGQAAS LV+GS++E  VQQI++MGGGSWD+ETV RALRAAY
Sbjct:  131 DTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAY 174          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            M+V +KTL+   F+I++ PE+ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct:    1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340
            M V +KTL+   F+I++ P++ V  +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K
Sbjct:    1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
The following BLAST results are available for this feature:
BLAST of CN189369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RD23C_ARATH8.825e-3283.33Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH9.450e-2674.36Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ7.488e-2367.95Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH8.279e-2266.67Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.844e-2166.67Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_RAT4.118e-1346.15UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE4.118e-1346.15UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN4.118e-1346.15UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN2.669e-1244.87UV excision repair protein RAD23 homolog B OS=Bos ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L23_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189369 ID=CN189369; Name=CN189369; organism=Citrus sinensis; type=EST; length=707bp
ATATCTGATTTCGCTTTCTCAGTGAAAGTGATCGCCGGCGGTAACCAGAG
AAGGGGTAATTTGCCGGAGAATCGGAGACTGTTCGAGGGAGTAAGTTTCG
GAGAAGATGAAGGTTTTCGTTAAGACTTTGAAGGGAACTCACTTCGAGAT
CGAAGTGAAGCCCGAAGACAAGGTTTCTGATGTAAAGAAGAATATAGAGA
CTGTACAGGGTTCTGATGTTTACCCTGCTTCACAGCAAATGCTTATTCAT
CAGGGGAAAGTTCTTAAGGATGTCACAACCCTGGAAGAAAACAAAGTTGC
TGAAAACAGTTTTGTTGTTGTCATGCTGACCAAGAGTAAGGTTTCATCAA
GTGGGGCCTCAACTGCTTCAGCTGCACCAGCAAATCAGGCCCAAACTACA
AGTTCTGCGCCTCCTACCTCGACACAACCAACGACTACATCTCAGACTCC
TGCACCAACTGTGGCACCGCCACAATCTGTCCCTGAATCTGCTCCTCCTC
CTGCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCAGCTCCAGCT
CCAGCTCCAGTCTCTTCAGTATCAGATGTGTACGGCCAAGCTGCATCAAA
TCTTGTTGCAGGAAGTAATTTAGAAGCTACTGTCCAACAGATTCTTGATA
TGGGTGGAGGGAGTTGGGACCGAGAAACTGTTATTCGTGCTTTACGTGCT
GCATATA
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