CN189369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 8.825e-32 Identity = 65/78 (83.33%), Postives = 74/78 (94.87%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 MK+FVKTLKGTHFEIEVKPED V DVKKNIE+VQG+DVYPA++QMLIHQGKVLKD TT+EENKVAENSF+V+M+ KSK Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSK 78 HSP 2 Score: 80.4925 bits (197), Expect = 9.802e-15 Identity = 37/44 (84.09%), Postives = 42/44 (95.45%), Query Frame = 2 Query: 575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706 DVYGQAASNL AGSNLE+T+QQILDMGGG+WDRETV+ ALRAA+ Sbjct: 172 DVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAF 215
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26 Identity = 58/78 (74.36%), Postives = 70/78 (89.74%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 MK+FVKTL G++FEIEVKP DKVSDVK IETV+G++ YPA++QMLIHQGKVLKD TTLEEN V ENSF+V+ML+K+K Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77 HSP 2 Score: 81.6481 bits (200), Expect = 4.400e-15 Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 2 Query: 575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706 DVYGQAASNLVAG+ LE+TVQQILDMGGGSWDR+TV+RALRAA+ Sbjct: 133 DVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAF 176
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23 Identity = 53/78 (67.95%), Postives = 63/78 (80.77%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 MK+ VKTLKG+ F+IEV KV+DVK+ IET QG +YPA QQMLIHQGKVLKD TTL+ENKV ENSF+V+ML + K Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78 HSP 2 Score: 68.9366 bits (167), Expect = 2.951e-11 Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2 Query: 575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706 D YGQA SNLVAGSNLEAT+Q IL+MGGG WDR+ V+ AL AA+ Sbjct: 143 DNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSAAF 186
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22 Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 MK+ VKTLKG+HFEI V P D + VKKNIE QG D YP QQ+LIH GKVLKD T+L ENKV E F+VVML+KSK Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78 HSP 2 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 2 Query: 575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706 D YGQAAS LV+GS+LE VQQI++MGGGSWD+ETV RALRAAY Sbjct: 133 DTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAY 176
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 1.844e-21 Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 MK+ VKTLKG+HFEI V P D + VKKNIE Q D YP QQ+LIH GKVLKD TTL ENKV E F+VVML+KSK Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSK 78 HSP 2 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 2 Query: 575 DVYGQAASNLVAGSNLEATVQQILDMGGGSWDRETVIRALRAAY 706 D YGQAAS LV+GS++E VQQI++MGGGSWD+ETV RALRAAY Sbjct: 131 DTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAY 174
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 36/78 (46.15%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 M+V +KTL+ F+I++ PE+ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
BLAST of CN189369 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 35/78 (44.87%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 107 MKVFVKTLKGTHFEIEVKPEDKVSDVKKNIETVQGSDVYPASQQMLIHQGKVLKDVTTLEENKVAENSFVVVMLTKSK 340 M V +KTL+ F+I++ P++ V +K+ IE+ +G D +P + Q LI+ GK+L D T L+E K+ E +FVVVM+TK K Sbjct: 1 MLVTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 The following BLAST results are available for this feature:
BLAST of CN189369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189369 ID=CN189369; Name=CN189369; organism=Citrus sinensis; type=EST; length=707bpback to top |