CN189358

Overview
NameCN189358
Unique NameCN189358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189358_ssr132 microsatellite CN189358_ssr132:132..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT31_ARATH (Sulfate transporter 3.1 OS=Arabidopsis thaliana GN=SULTR3;1 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.849e-75
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 2
Query:  161 GNADYVYPSSKENVENAHR-VAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            G  DY +P   E +   H  V  P PQPF  SL+Y++KET FPDDP R FKN+ AS+KF+LGL+Y  PIFEWAPRY+ +F K+DLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYA++GSS+DLAVGTVAVASLL  + L +EV+  ++PKLYLHLAFTATFFAGV +ASLG+ RLGFIVDFL
Sbjct:    2 GTEDYTFPQGAEELHRRHHTVEAPQPQPFLKSLQYSVKETLFPDDPFRQFKNQNASRKFVLGLKYFLPIFEWAPRYNLKFFKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAVLGSSRDLAVGTVAVASLLTGAMLSKEVDAEKDPKLYLHLAFTATFFAGVLEASLGIFRLGFIVDFL 193          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT32_ARATH (Sulfate transporter 3.2 OS=Arabidopsis thaliana GN=SULTR3;2 PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.691e-65
Identity = 128/183 (69.95%), Postives = 146/183 (79.78%), Query Frame = 2
Query:  188 SKENVENAHRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKP-ASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            S +     H+V IPPPQPF  SLK  L E  F DDP R  +N+   SKK  LGL++VFPI EWA  YS ++LK+D+I+GITIASLAIPQGISYA+LANLPPILGLYSS VPPLVYAIMGSS+DLAVGTVAVASLL A+ LG+EVN   NPKLYLHLAFTATFFAG+ Q  LGLLRLGF+V+ L
Sbjct:    2 SSKRASQYHQVEIPPPQPFLKSLKNTLNEILFADDPFRRIRNESKTSKKIELGLRHVFPILEWARGYSLEYLKSDVISGITIASLAIPQGISYAQLANLPPILGLYSSLVPPLVYAIMGSSRDLAVGTVAVASLLTAAMLGKEVNAVVNPKLYLHLAFTATFFAGLMQTCLGLLRLGFVVEIL 184          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT33_ARATH (Probable sulfate transporter 3.3 OS=Arabidopsis thaliana GN=SULTR3;3 PE=2 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 5.091e-62
Identity = 113/174 (64.94%), Postives = 142/174 (81.61%), Query Frame = 2
Query:  212 HRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            H+V  PP +     LK  LKETFFPDDPLR F+ +P   K I   QY+FPI +W P YSF  LK+D+++G+TIASLAIPQGISYAKLANLPPI+GLYSSFVPPLVYA++GSS+DLAVG V++ASL++ S L Q+V+  ++P L+L LAF++TFFAG+FQASLG+LRLGFI+DFL
Sbjct:    4 HKVVAPPHKSTVAKLKTKLKETFFPDDPLRQFRGQPNRTKLIRAAQYIFPILQWCPEYSFSLLKSDVVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQQVSPVDDPVLFLQLAFSSTFFAGLFQASLGILRLGFIIDFL 177          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT34_ARATH (Probable sulfate transporter 3.4 OS=Arabidopsis thaliana GN=SULTR3;4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.002e-58
Identity = 109/180 (60.56%), Postives = 141/180 (78.33%), Query Frame = 2
Query:  194 ENVENAHRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            E V   H V +PP +  F  LK  + + FFPDDPL+ F+N+    + ILGLQ +FPIF W  +Y  + L++D+I+G+TIASLAIPQGISYAKLANLPPI+GLYSSFVPPL+YA++GSS+ LAVG V++ASL++ S L + V+  ++  LYL LAFT+TFFAGVFQASLGLLRLGF++DFL
Sbjct:   21 ETVVEIHSVCLPPKKTAFQKLKKRVGDVFFPDDPLQRFRNQTWRNRVILGLQSLFPIFTWGSQYDLKLLRSDVISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLIYAVLGSSRHLAVGPVSIASLVMGSMLSESVSPTQDSILYLKLAFTSTFFAGVFQASLGLLRLGFMIDFL 200          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT13_ARATH (Sulfate transporter 1.3 OS=Arabidopsis thaliana GN=SULTR1;3 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 114/195 (58.46%), Postives = 138/195 (70.77%), Query Frame = 2
Query:  155 DKGNADYVYPSS--KENVENAHRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            D G    V  SS  + N    H+V +PP Q  FN   Y  KETFF DDPLR FK++  SKK +LG+Q VFP+ EW  +Y+ +  + DLIAG+TIASL IPQ I YAKLA+L P  GLYSSFVPPLVYA MGSSKD+A+G VAV SLL+ + L  E++ N NP  YL LAFT+TFFAGV QA+LG  RLGF++DFL
Sbjct:   10 DDGEISPVERSSPRQANTPYVHKVEVPPKQNLFNEFMYTFKETFFHDDPLRHFKDQSKSKKLMLGIQSVFPVIEWGRKYNLKLFRGDLIAGLTIASLCIPQDIGYAKLASLDPKYGLYSSFVPPLVYACMGSSKDIAIGPVAVVSLLLGTLLRAEIDPNTNPNEYLRLAFTSTFFAGVTQAALGFFRLGFLIDFL 204          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT12_ARATH (Sulfate transporter 1.2 OS=Arabidopsis thaliana GN=SULTR1;2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.825e-58
Identity = 108/174 (62.07%), Postives = 133/174 (76.44%), Query Frame = 2
Query:  212 HRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            H+V IPP Q  F    Y  KETFF DDPLR FK++P SK+F+LGLQ VFP+F+W   Y+F+  + DLI+G+TIASL IPQ I YAKLANL P  GLYSSFVPPLVYA MGSS+D+A+G VAV SLL+ + L  E++ N +P  YL LAFTATFFAG+ +A+LG  RLGF++DFL
Sbjct:   28 HKVGIPPKQNMFKDFMYTFKETFFHDDPLRDFKDQPKSKQFMLGLQSVFPVFDWGRNYTFKKFRGDLISGLTIASLCIPQDIGYAKLANLDPKYGLYSSFVPPLVYACMGSSRDIAIGPVAVVSLLLGTLLRAEIDPNTSPDEYLRLAFTATFFAGITEAALGFFRLGFLIDFL 201          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT2_STYHA (High affinity sulfate transporter 2 OS=Stylosanthes hamata GN=ST2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.657e-52
Identity = 100/174 (57.47%), Postives = 125/174 (71.84%), Query Frame = 2
Query:  212 HRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            H+V  PP Q  F  +K++  ETFFPD P   FK++  S+KF+LGLQY+FPI EW   Y  +  + D IAG+TIASL IPQ ++YAKLANL P  GLYSSFV PLVYA MG+S+D+A+G VAV SLL+ + L  E++ N     YL LAFTATFFAGV Q  LG+ RLGF++DFL
Sbjct:   39 HKVGAPPKQTLFQEIKHSFNETFFPDKPFGNFKDQSGSRKFVLGLQYIFPILEWGRHYDLKKFRGDFIAGLTIASLCIPQDLAYAKLANLDPWYGLYSSFVAPLVYAFMGTSRDIAIGPVAVVSLLLGTLLSNEIS-NTKSHDYLRLAFTATFFAGVTQMLLGVCRLGFLIDFL 211          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT1_STYHA (High affinity sulfate transporter 1 OS=Stylosanthes hamata GN=ST1 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.423e-50
Identity = 98/174 (56.32%), Postives = 122/174 (70.11%), Query Frame = 2
Query:  212 HRVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            H+V  PP Q  F  +K++  ETFFPD P   FK++   +K  LGLQY+FPI EW   Y  +  + D IAG+TIASL IPQ ++YAKLANL P  GLYSSFV PLVYA MG+S+D+A+G VAV SLL+ + L  E++ N     YL LAFTATFFAGV Q  LG+ RLGF++DFL
Sbjct:   42 HKVGTPPKQTLFQEIKHSFNETFFPDKPFGKFKDQSGFRKLELGLQYIFPILEWGRHYDLKKFRGDFIAGLTIASLCIPQDLAYAKLANLDPWYGLYSSFVAPLVYAFMGTSRDIAIGPVAVVSLLLGTLLSNEIS-NTKSHDYLRLAFTATFFAGVTQMLLGVCRLGFLIDFL 214          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT11_ARATH (Sulfate transporter 1.1 OS=Arabidopsis thaliana GN=SULTR1;1 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.838e-50
Identity = 99/173 (57.23%), Postives = 124/173 (71.68%), Query Frame = 2
Query:  215 RVAIPPPQPFFNSLKYNLKETFFPDDPLRLFKNKPASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            RV  PP       +K  ++ETFF D PLR FK +  +KK +LG+Q VFPI  WA  Y+ +  + DLIAG+TIASL IPQ I YAKLAN+ P  GLYSSFVPPL+YA MGSS+D+A+G VAV SLL+ +     ++  +NP+ YL L FTATFFAG+FQA LG LRLGF++DFL
Sbjct:   24 RVLAPPKAGLLKDIKSVVEETFFHDAPLRDFKGQTPAKKALLGIQAVFPIIGWAREYTLRKFRGDLIAGLTIASLCIPQDIGYAKLANVDPKYGLYSSFVPPLIYAGMGSSRDIAIGPVAVVSLLVGTLCQAVIDPKKNPEDYLRLVFTATFFAGIFQAGLGFLRLGFLIDFL 196          
BLAST of CN189358 vs. ExPASy Swiss-Prot
Match: SUT35_ARATH (Probable sulfate transporter 3.5 OS=Arabidopsis thaliana GN=SULTR3;5 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.625e-50
Identity = 102/171 (59.65%), Postives = 124/171 (72.51%), Query Frame = 2
Query:  233 PQPFFNSLKYNLKETFFPDDPLRLFKNKP----ASKKFILGLQYVFPIFEWAPRYSFQFLKADLIAGITIASLAIPQGISYAKLANLPPILGLYSSFVPPLVYAIMGSSKDLAVGTVAVASLLIASFLGQEVNYNENPKLYLHLAFTATFFAGVFQASLGLLRLGFIVDFL 733
            P+ F +  K   KETFFPDDP +    +P     +KK    L+Y  PIFEW P+Y  Q LK D++AGITI SLA+PQGISYAKLA++PPI+GLYSSFVPP VYA+ GSS +LAVGTVA  SLLIA   G+E+  NE P+LYLHL FTAT   G+FQ ++G LRLG +VDFL
Sbjct:   22 PRGFGSKFKSKCKETFFPDDPFKPISQEPNRLLKTKKL---LEYFVPIFEWLPKYDMQKLKYDVLAGITITSLAVPQGISYAKLASIPPIIGLYSSFVPPFVYAVFGSSNNLAVGTVAACSLLIAETFGEEMIKNE-PELYLHLIFTATLITGLFQFAMGFLRLGILVDFL 188          
The following BLAST results are available for this feature:
BLAST of CN189358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
SUT31_ARATH6.849e-7571.35Sulfate transporter 3.1 OS=Arabidopsis thaliana GN... [more]
SUT32_ARATH1.691e-6569.95Sulfate transporter 3.2 OS=Arabidopsis thaliana GN... [more]
SUT33_ARATH5.091e-6264.94Probable sulfate transporter 3.3 OS=Arabidopsis th... [more]
SUT34_ARATH2.002e-5860.56Probable sulfate transporter 3.4 OS=Arabidopsis th... [more]
SUT13_ARATH3.415e-5858.46Sulfate transporter 1.3 OS=Arabidopsis thaliana GN... [more]
SUT12_ARATH5.825e-5862.07Sulfate transporter 1.2 OS=Arabidopsis thaliana GN... [more]
SUT2_STYHA3.657e-5257.47High affinity sulfate transporter 2 OS=Stylosanthe... [more]
SUT1_STYHA3.423e-5056.32High affinity sulfate transporter 1 OS=Stylosanthe... [more]
SUT11_ARATH5.838e-5057.23Sulfate transporter 1.1 OS=Arabidopsis thaliana GN... [more]
SUT35_ARATH7.625e-5059.65Probable sulfate transporter 3.5 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189358 ID=CN189358; Name=CN189358; organism=Citrus sinensis; type=EST; length=734bp
GCAGGCACCTCCGAATTCAGCGTAGCCACTCCTATAACACTGCGCATATC
TTTTGCATTTAGCTCAACCCAAATACGTTCTCCGATATAAAACGCAGCCG
CTGCATTTTATTCTCTCTATCTTGCATTTAGTTAATTAATTAATTAACTA
CATGGATAAGGGTAACGCAGACTACGTGTATCCATCGTCTAAAGAAAATG
TGGAGAATGCACATCGTGTTGCGATTCCCCCACCGCAGCCATTTTTCAAT
TCACTAAAGTATAATCTTAAAGAGACGTTCTTCCCTGATGATCCGCTCAG
GCTATTCAAGAACAAGCCGGCATCTAAGAAGTTCATATTAGGCCTTCAGT
ATGTGTTTCCCATTTTTGAATGGGCTCCGCGTTACAGCTTTCAGTTCTTG
AAAGCTGACCTTATTGCTGGGATCACCATTGCAAGTCTCGCAATTCCTCA
GGGGATTAGTTATGCGAAGCTGGCGAACTTGCCCCCAATTCTTGGCCTAT
ATTCAAGCTTTGTTCCGCCATTGGTTTATGCTATCATGGGGAGCTCCAAA
GATTTGGCAGTTGGAACGGTGGCTGTCGCCTCACTTCTCATAGCTTCATT
CTTGGGGCAAGAAGTTAATTATAATGAGAACCCTAAGCTATATCTTCATC
TTGCTTTCACTGCAACATTTTTTGCTGGTGTTTTTCAAGCTTCCTTGGGA
CTGCTAAGGCTAGGGTTTATCGTGGACTTTTTAT
back to top