CN189352

Overview
NameCN189352
Unique NameCN189352
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189352 vs. ExPASy Swiss-Prot
Match: YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe GN=SPCC23B6.04c PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = -3
Query:  277 LILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 726
            L L P  QNT +   Q+RHLV+ +E AI  +P G E +A LI+F   S  ++  +   +E +NILQ HY ERL  A + N P     F+K++  F+D  T +K+KF  P        +  Y  ++ L + FGG     Y HE++   +++
Sbjct:  698 LYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP--------LDRYVPKDQLDSNFGGSLHFEYHHEKYWPQLVE 839          
BLAST of CN189352 vs. ExPASy Swiss-Prot
Match: PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae GN=PDR16 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 53/158 (33.54%), Postives = 83/158 (52.53%), Query Frame = -3
Query:  277 VLILRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGW-------SLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 729
            +L L+PG QNT +   Q++HLV+++E  I  +P GQ+ +A LIDF  +         S   PI   +E ++ILQ HYPERL  A L N P +   F K++  F+D  T +K+ F  P  K        Y  +  L + +GG     Y+H+ +   +++
Sbjct:  157 ILYLKPGRQNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFIDPLTREKLVFDEPFVK--------YVPKNELDSLYGGDLKFKYNHDVYWPALVE 306          
BLAST of CN189352 vs. ExPASy Swiss-Prot
Match: PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae GN=PDR17 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 49/153 (32.03%), Postives = 74/153 (48.37%), Query Frame = -3
Query:  277 LRPGMQNTASIDNQMRHLVYLIENAILNLPEGQEQMAWLIDFTGWS-----LSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMSSYFDEENLPTEFGGKATLHYDHEEFSKLMIQ 720
            ++ G QNT S   Q++ LVY++E A    P+G E++  L+DF  +         + PI  AR  +N++Q+HYPERLA   L N P    AF K++  FLD  T  K  F  P          ++ +   L   + G     Y HE +   M++
Sbjct:  164 MKNGRQNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKMMYPFLDPATKAKAIFDEP--------FENHIEPSQLDALYNGLLDFKYKHEVYWPDMVK 308          
BLAST of CN189352 vs. ExPASy Swiss-Prot
Match: RSC5_DICDI (Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.169e-12
Identity = 39/136 (28.68%), Postives = 72/136 (52.94%), Query Frame = -3
Query:  289 QMRHLVYLIENAILNL--PEGQEQMAWLIDFTGWSLSTSVPIRSARETINILQNHYPERLAIAFLYNPPRIFEAFWKVVKYFLDAKTFQKVKFVYPKNKDSVEVMS---SYFDEENLPTEFGGKATLHYDHEEFSK 681
            + ++LVY +E     +  P+G EQ  +++D+  +  S ++ +++  E ++ L +H PER+  +   +PP +F   WK++  FL+  T  KV+F+  K  D     +    Y D ENL    GG    +Y+ +E+ K
Sbjct:  154 KFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKIISPFLNEVTLSKVRFINSKKVDGKRTFAELLEYVDIENLEQNLGGNLDYNYNIDEYLK 288          
The following BLAST results are available for this feature:
BLAST of CN189352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YJX4_SCHPO1.714e-1734.67CRAL-TRIO domain-containing protein C23B6.04c OS=S... [more]
PDR16_YEAST2.239e-1733.54Phosphatidylinositol transfer protein PDR16 OS=Sac... [more]
PDR17_YEAST1.962e-1332.03Phosphatidylinositol transfer protein PDR17 OS=Sac... [more]
RSC5_DICDI2.169e-1228.68Random slug protein 5 OS=Dictyostelium discoideum ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L13_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189352 ID=CN189352; Name=CN189352; organism=Citrus sinensis; type=EST; length=734bp
GCAGGGTTTTATTCTACTAATTTCATGTCCGAGTTATGAGCGCCAATGGA
AGAAATACAATATTTTCCTTCGCACAGTAACTATAGCCCATCGGGAGCAT
CCGAAGATGATAAATTGATAATGTTGCTAAAATTTTGATTTCCCTATCAT
TTATTACAATGATACCAGAGCAGCTCAACTGGCTGGCTCTGGAGCCACTT
CAGCTCCAGAATGCCCATTACCAACGCGTTGCAGTTTGTCATCAAATCCC
CACAATGTTGCTGATTTTGAATCATCTTGAATCATTAATTTGGAAAACTC
TTCATGGTCATAATGCAATGTGGCCTTTCCTCCAAACTCAGTCGGAAGAT
TTTCCTCATCAAAATATGAACTCATGACTTCCACGCTGTCTTTATTCTTT
GGATATACAAATTTCACCTTTTGGAATGTTTTGGCATCCAAGAAATACTT
GACAACCTTCCAAAATGCTTCAAAAATCCGTGGGGGATTGTAGAGAAATG
CTATGGCCAGCCTTTCAGGGTAGTGATTTTGTAATATATTGATAGTTTCT
CGGGCAGACCTGATGGGGACGCTGGTGCTCAATGACCACCCAGTGAAGTC
TATTAACCATGCCATTTGTTCCTGACCCTCTGGAAGGTTTAGGATAGCAT
TCTCTATGAGATAGACTAGGTGTCTCATCTGATTGTCTATTGATGCAGTG
TTCTGCATTCCGGGTCTCAATATGAGAACAGTCC
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