CN189346

Overview
NameCN189346
Unique NameCN189346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12886 contig Csv1_Contig12886:39..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189346 vs. ExPASy Swiss-Prot
Match: FBK30_ARATH (F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana GN=At1g80440 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = -3 
Query:  174 AMAYDVARDEWASLPDMSRERDECKAVFHCGKLLVIGGYSTNAQGRFERHAEAFDAAAQQWGPVEEDYME---TATCPRSCAGVDSNDLYMCREGEVMALRCNTWQAVARLPADVCSVAFVTTWQGKLMVTGS----ARFGEPHMSYLLDLKSCKWTRTVTPDEFSGHVQSGCYLEI 683
            AM YDV+ D+W  LPDM+RERDECKAVFH G+  VIGGY+T  QG+F + AE+FD +  +WGP+ ED+++       P +C  V   DLY C  G+VM    + WQ V ++PADV +V +V    G L+V G+    A +GE  + Y+ DL S +W +  T     GHVQ+GC+LE+
Sbjct:  183 AMVYDVSEDKWTFLPDMARERDECKAVFHAGRFHVIGGYATEEQGQFSKTAESFDVSTWEWGPLTEDFLDDTGDTVSPPTC--VAGGDLYACWGGDVMMFLNDKWQKVGQIPADVYNVTYVAVRPGMLIVIGNGKALAGYGEATVGYICDLSSSRWVKLET---HGGHVQAGCFLEV 354
The following BLAST results are available for this feature:
BLAST of CN189346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBK30_ARATH1.074e-3945.76F-box/kelch-repeat protein At1g80440 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L10_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189346 ID=CN189346; Name=CN189346; organism=Citrus sinensis; type=EST; length=685bp
TTTTTTTTTTTTTTTTTGATCATGAAAATTTCTCATTAACTATTTTATAA
AAAAAAACAACAATACAAATTCTATTTTAATTTTAAAAAGGAAAAAAAAA
ACTATTTTTCCTTTTTTATTTTATTTTTATGTTCATGTATTTGTACGTAG
AAGAACGAGCAATCGTCTCTTCAGATCTCCAAGTAACAACCAGATTGAAC
ATGTCCTGAAAATTCATCAGGAGTCACCGTTCGTGTCCACTTGCAGCTCT
TCAAATCCAACAAGTAACTCATGTGGGGCTCACCGAATCTAGCCGAACCG
GTCACCATCAACTTCCCCTGCCACGTCGTCACGAATGCCACGCTGCACAC
ATCAGCAGGTAGCCTCGCCACAGCTTGCCACGTGTTACATCTCAGTGCCA
TCACCTCGCCTTCCCGACACATGTACAAATCATTGCTGTCGACACCCGCG
CATGACCTGGGACACGTGGCCGTTTCCATGTAGTCCTCTTCAACCGGGCC
CCACTGCTGCGCGGCGGCATCAAAGGCTTCGGCATGTCTCTCAAAACGAC
CTTGCGCATTGGTCGAGTACCCTCCAATGACGAGGAGCTTGCCACAGTGG
AAAACCGCTTTGCACTCGTCACGCTCCCTTGACATGTCGGGAAGCGAGGC
CCACTCATCTCTGGCCACGTCATACGCCATTGCTG
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