CN189343

Overview
NameCN189343
Unique NameCN189343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4529 contig Csv1_Contig4529:228..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK23_ORYSJ (Potassium transporter 23 OS=Oryza sativa subsp. japonica GN=HAK23 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.294e-38
Identity = 83/152 (54.61%), Postives = 101/152 (66.45%), Query Frame = 3
Query:   27 EFLRKEAQHLALERNLLESGLDSVSVASRDPEASGTYGTEELKIPLMHGRRFDXXXXXXXXXXXXXXXXXVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            +FLRKE+Q +ALE + +    D VSV S  P +    G  +L +PL+  +R                       +EDPSLEYEL +LREAI SGFTYLLAHGDVRA+K+SFF KK +INYFYAFLRRNCRAGTA + VPH NI++VGMTYMV
Sbjct:  728 KFLRKESQEMALEASAMAVERDDVSVVSDIPSSPVEAG--DLHVPLLSDQRLGDGTQTFITEGNTPVLPTSSISEEDPSLEYELESLREAIASGFTYLLAHGDVRARKESFFTKKFIINYFYAFLRRNCRAGTATLKVPHSNIMRVGMTYMV 877          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: POT12_ARATH (Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.342e-36
Identity = 88/152 (57.89%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   27 EFLRKEAQHLALERNLLESGLDSVSVASRDPEASGTYGTEELKIPLMHGRRFDXXXXXXXXXXXXXXXXXVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            +FLR EA   ALE  L +   D VSVAS       TY T++L  PL+H  +                     +++EDP+LEYEL+ALREA DSG TYLLAHGDVRAKK S F+KKLVINYFYAFLRRNCRAG AN++VPHMNILQ GMTYMV
Sbjct:  684 KFLRCEALEDALESTLNDFDPDRVSVAS------DTY-TDDLMAPLIHRAKRSEPEQELDSEVLPSSSVG-SSMEEDPALEYELAALREATDSGLTYLLAHGDVRAKKNSIFVKKLVINYFYAFLRRNCRAGAANLTVPHMNILQAGMTYMV 827          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: POT13_ARATH (Potassium transporter 13 OS=Arabidopsis thaliana GN=POT13 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.625e-24
Identity = 68/155 (43.87%), Postives = 88/155 (56.77%), Query Frame = 3
Query:   27 EFLRKEAQHLALERNLLESGLDSVSVASRDPEASGTYGTE-ELKIPLM--HGRRFDXXXXXXXXXXXXXXXXXVMALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            +F+RKEAQ  ALE +   +  DS    +         G+   L +PL+  H    +                   ALD + SLE ELS + +A +SG  YLL HGD+RA K S+FLKKLVINY YAFLR+N R G  N+SVPH +++QVGMTYMV
Sbjct:  701 KFIRKEAQERALESDGDHNDTDSEDDTTLSRVLIAPNGSVYSLGVPLLAEHMNSSNKRPMERRKASIDFGAGPSSALDVEQSLEKELSFIHKAKESGVVYLLGHGDIRATKDSWFLKKLVINYLYAFLRKNSRRGITNLSVPHTHLMQVGMTYMV 855          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: POT7_ARATH (Potassium transporter 7 OS=Arabidopsis thaliana GN=POT7 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.466e-23
Identity = 49/78 (62.82%), Postives = 63/78 (80.77%), Query Frame = 3
Query:  249 DEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            + + SLE ELS + +A +SG  YLL HGD+RA+K S+F+KKLVINYFY FLR+NCR G AN+SVP  +++QVGMTYMV
Sbjct:  781 EAEQSLERELSFIHKAKESGVVYLLGHGDIRARKDSWFIKKLVINYFYTFLRKNCRRGIANLSVPQSHLMQVGMTYMV 858          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK14_ORYSJ (Probable potassium transporter 14 OS=Oryza sativa subsp. japonica GN=HAK14 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 49/80 (61.25%), Postives = 62/80 (77.50%), Query Frame = 3
Query:  243 ALDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            A+D   SL+ ELS + +A +SG  YLL HGD+RA+K+SFF+KKLVINYFYAFLRRNCR G A +S+P   ++QV M YMV
Sbjct:  780 AIDGRGSLDDELSFIHKAKESGVVYLLGHGDIRARKESFFVKKLVINYFYAFLRRNCRRGIAALSIPPSRMMQVAMQYMV 859          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK15_ORYSJ (Probable potassium transporter 15 OS=Oryza sativa subsp. japonica GN=HAK15 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  246 LDEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            +D   +LE EL+ +R+A  SG  YL+ +  V+A+K S+F KKL+INYF+AFLR NCR    +MS+PH N++QV +T  V
Sbjct:  789 VDYTQNLELELAFIRQAKQSGAVYLIDNPIVKARKNSWFFKKLIINYFFAFLRNNCRRAMMSMSIPHTNVMQVRLTSYV 867          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.222e-13
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  255 DPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            DP +  EL+ L +A ++G TY++ H  V+A+K S FLK   I+Y Y+FLR+NCR     + +PH+++++VGM Y V
Sbjct:  736 DPQVRDELADLLDAKEAGVTYIIGHSYVKARKNSNFLKTFAIDYAYSFLRKNCRGPAVALHIPHISLVEVGMIYYV 811          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 33/76 (43.42%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  255 DPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            DP ++ ELSAL EA  +G  Y++ H  ++A+K S   KK  +N  YAFLR+NCR     +++PH+++++VGM Y V
Sbjct:  733 DPRVKEELSALVEAKHAGVAYIMGHSYIKARKSSSVFKKFAVNVAYAFLRKNCRGPGLVLNIPHISLIEVGMIYYV 808          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  249 DEDPSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTYMV 482
            D D  ++ EL AL EA  +G TY++ H  ++A+K S F K+  I+  Y+FLR+NCR  +  + +PH+++++VGM Y V
Sbjct:  706 DMDQQVKDELLALVEAKHTGVTYVMGHVYIKARKNSSFFKRFAIDVGYSFLRKNCRGPSVTLHIPHISLIEVGMAYQV 783          
BLAST of CN189343 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.011e-12
Identity = 31/73 (42.47%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  258 PSLEYELSALREAIDSGFTYLLAHGDVRAKKKSFFLKKLVINYFYAFLRRNCRAGTANMSVPHMNILQVGMTY 476
            P ++ EL  L  A D+   Y++ HG V+AK+ S F+K+LV+N  Y+FLR+NCR+    +++PH+ +++VGM Y
Sbjct:  701 PQVKEELFDLVNAKDAEVAYIVGHGHVKAKRNSVFVKQLVVNVAYSFLRKNCRSPGVMLNIPHICLIKVGMNY 773          
The following BLAST results are available for this feature:
BLAST of CN189343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HAK23_ORYSJ9.294e-3854.61Potassium transporter 23 OS=Oryza sativa subsp. ja... [more]
POT12_ARATH1.342e-3657.89Putative potassium transporter 12 OS=Arabidopsis t... [more]
POT13_ARATH2.625e-2443.87Potassium transporter 13 OS=Arabidopsis thaliana G... [more]
POT7_ARATH6.466e-2362.82Potassium transporter 7 OS=Arabidopsis thaliana GN... [more]
HAK14_ORYSJ1.593e-2161.25Probable potassium transporter 14 OS=Oryza sativa ... [more]
HAK15_ORYSJ7.656e-1649.37Probable potassium transporter 15 OS=Oryza sativa ... [more]
HAK7_ORYSJ1.222e-1343.42Potassium transporter 7 OS=Oryza sativa subsp. jap... [more]
HAK3_ORYSJ2.723e-1343.42Probable potassium transporter 3 OS=Oryza sativa s... [more]
HAK2_ORYSJ1.351e-1241.03Probable potassium transporter 2 OS=Oryza sativa s... [more]
POT3_ARATH3.011e-1242.47Potassium transporter 3 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189343 ID=CN189343; Name=CN189343; organism=Citrus sinensis; type=EST; length=575bp
TTTACACTCTTAGTTGCGAGTCTTGAGAATTTCTGAGAAAGGAGGCTCAA
CATCTTGCCCTGGAGAGAAACTTACTCGAGTCAGGTTTAGATAGTGTTTC
TGTGGCCTCAAGGGATCCTGAAGCTTCAGGTACTTACGGTACTGAGGAGC
TTAAGATTCCACTGATGCATGGTAGGAGATTTGATGAATCAGGAACTTCT
GCCTCGGAAGAAACTACATCAGCATTGCCGTCTAGTGTCATGGCATTGGA
CGAAGACCCTAGTCTAGAATATGAGCTTTCAGCTCTTAGAGAAGCAATTG
ATTCAGGATTTACATATTTGCTTGCACATGGGGATGTGAGAGCAAAAAAG
AAATCATTTTTCCTTAAGAAACTGGTTATAAACTACTTCTATGCCTTCTT
AAGGAGGAACTGCAGAGCAGGTACTGCGAATATGAGTGTACCTCACATGA
ACATCCTGCAAGTTGGGATGACATACATGGTCTGATTTGGTTTGTCACCT
GTACGATTCTTCCCATTTTTTTTTTTTTTTATGTATTGGATCTCTATATT
ACCCCTTGATGAATATTTATGGGAA
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