CN189340

Overview
NameCN189340
Unique NameCN189340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_THEEB (Protein translocase subunit secA OS=Thermosynechococcus elongatus (strain BP-1) GN=secA PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 9.325e-62
Identity = 114/203 (56.16%), Postives = 153/203 (75.37%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +PF++ I+DEVDSVLIDE R PL+ISG+  +   +Y  AA++A LL +  HY V+ K  +V +T+EG   AE  L  +DL+D  DPWA ++ NA+KAKE ++RDV YIVRNG+ +I++E TGRV   RRWS+G+HQA+EAKEGL+IQ +S  +A ITYQ+LF LYPKL+GMTGTAKTEE EF K++++ V  VPTN P+ R D
Sbjct:  197 RPFNYCIIDEVDSVLIDEARTPLIISGQVERPTEKYLKAAEIARLLKKDEHYEVDEKARNVLMTDEGFIEAEKLLGVSDLYDPQDPWAHYIFNAIKAKELFQRDVNYIVRNGEVVIVDEFTGRVMVGRRWSDGLHQAIEAKEGLEIQNESQTLATITYQNLFLLYPKLAGMTGTAKTEEAEFEKIYKLEVTVVPTNRPSQRRD 399          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNY3 (Protein translocase subunit secA OS=Synechocystis sp. (strain PCC 6803) GN=secA PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.728e-60
Identity = 108/203 (53.20%), Postives = 148/203 (72.91%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +PF+F I+DEVDS+LIDE R PL+ISG+  +   +Y  A+ +A  L   +HY V+ K  +V +T+EG   AE  L+T DL+D+NDPWA ++ NA+KAKE + +DV YIVRNG+ +I++E TGR+   RRWS+G+HQA+EAKE ++IQ +S  +A ITYQ+ F LYPKLSGMTGTAKTEE E  K++ + V   PTN P+ R D
Sbjct:  204 RPFNFCIIDEVDSILIDEARTPLIISGQVERPTEKYLQASDIAAQLEPEIHYEVDEKQRNVLMTDEGFEKAEQLLQTTDLFDKNDPWAHYIFNAIKAKELFLKDVNYIVRNGEVVIVDEFTGRIMVGRRWSDGLHQAIEAKERVEIQKESQTLATITYQNFFLLYPKLSGMTGTAKTEETELEKVYNLQVTITPTNRPSSRQD 406          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNJA (Protein translocase subunit secA OS=Synechococcus sp. (strain JA-3-3Ab) GN=secA PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.944e-59
Identity = 114/203 (56.16%), Postives = 148/203 (72.91%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +PF++ I+DEVDS+LIDE R PL+ISG+ ++   +Y  AA+VA  L++  HY V+ K  +V LT+EG   AE  L  +DL+D  DPWA FV NA+KAKE + RDV YIVRN + +I++E TGRV   RRWS+G+HQAVEAKEG+ IQ +S  +A ITYQ+LF LYPKLSGMTGTA+TEE EF K + + V  +PTN P  R D
Sbjct:  200 RPFNYCIIDEVDSILIDEARTPLIISGQMARPSEKYLKAAQVARELIRDEHYEVDEKARNVILTDEGFEAAERLLGVSDLFDPKDPWAHFVFNAVKAKELFIRDVHYIVRNQEVVIVDEFTGRVLPGRRWSDGLHQAVEAKEGVPIQNESQTLATITYQNLFLLYPKLSGMTGTARTEEAEFSKTYNLEVTVIPTNRPIRRKD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_SYNJB (Protein translocase subunit secA OS=Synechococcus sp. GN=secA PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.317e-59
Identity = 113/203 (55.67%), Postives = 149/203 (73.40%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVD 652
            +PF++ I+DEVDS+LIDE R PL+ISG+ ++   +Y  AA+VA  L++  HY V+ K  +V LT+EG   AE  L  +DL+D  DPWA FV NA+KAKE + +DV YIVRN + +I++E TGRV   RRWS+G+HQAVEAKEG+ IQ++S  +A ITYQ+LF LYPKLSGMTGTA+TEE EF K + + V  +PTN P  R D
Sbjct:  200 RPFNYCIIDEVDSILIDEARTPLIISGQVARPSEKYLRAAQVARELIRDEHYEVDEKARNVILTDEGFEAAERLLGVSDLFDPKDPWAHFVFNAVKAKELFIKDVHYIVRNQEVVIVDEFTGRVLPGRRWSDGLHQAVEAKEGVPIQSESQTLATITYQNLFLLYPKLSGMTGTARTEEAEFGKTYNLEVTVIPTNRPIRRKD 402          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_CYAP4 (Protein translocase subunit secA OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=secA PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 7.389e-59
Identity = 112/217 (51.61%), Postives = 153/217 (70.51%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A +  ++V+R   PFH+ ++DEVDSVLIDE R PL+ISG+  +   +Y  A  +A+ L +  HY V+ K  ++ LT+EG   AE  L   DL+D  DPWA ++ NA+KAKE + +DV YI+R G+ +I++E TGRV   RRWS+G+HQA+EAKEGL IQ +S  +A ITYQ+LF LYPKL+GMTGTAKTEE EF K++++ V  VPTN    R DL
Sbjct:  187 MATSMAEVVLR---PFHYCVIDEVDSVLIDEARTPLIISGQVERPTEKYLRATAIADALQKEEHYEVDEKARNILLTDEGFIEAEKLLGVKDLFDSQDPWAHYIFNAVKAKELFIKDVNYIIRGGEIVIVDEFTGRVMPGRRWSDGLHQAIEAKEGLDIQNESQTLATITYQNLFLLYPKLAGMTGTAKTEEAEFEKIYKLEVTVVPTNRATGRRDL 400          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_GLOVI (Protein translocase subunit secA OS=Gloeobacter violaceus GN=secA PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.646e-58
Identity = 113/217 (52.07%), Postives = 150/217 (69.12%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A N+ +LV R    F++ I+DEVDS+L+DE R PL+ISG  +K   +Y  A +VA  L +  HY V+ K  +V LT+EG   AE  L T DL+   DPWA FV NA+KAKE + +DVQYIVRN + +I++E TGRV   RRWSEG+HQAVEAKE + IQ ++  +A ITYQ+ F LYPKL+GMTGTA TEE EF K++ + V  +PTN   +R D+
Sbjct:  208 MATNAGELVQR---SFNYCIIDEVDSILVDEARTPLIISGMVAKPAEKYMRANEVATALERNTHYEVDEKQRNVTLTDEGFIAAEQMLSTEDLFSPRDPWAHFVFNAVKAKELFNKDVQYIVRNDEVVIVDEFTGRVMPGRRWSEGLHQAVEAKEMVTIQNETQTMASITYQNFFLLYPKLAGMTGTALTEEAEFGKIYSLEVTAIPTNRKVVRTDM 421          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_NOSP7 (Protein translocase subunit secA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=secA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.667e-58
Identity = 110/204 (53.92%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +PF++ ++DEVDS+LIDE R PL+ISG+  +   +Y  AA++A  L +  HY V+ K  +V LT+EG A AE  L   DL+D  DPWA FV NA+KAKE + +DV YIVRNG+ +I++E TGRV   RRWS+G+HQA+EAKE  +IQ ++  +A ITYQ+LF LYPKL GMTGTAKTEE EF K++++ V  +PTN    R DL
Sbjct:  197 RPFNYCVIDEVDSILIDEARTPLIISGQVERPTEKYLQAAEIAFTLKKDEHYDVDEKARNVLLTDEGFAEAENLLGVTDLFDPEDPWAHFVFNAIKAKELFLKDVNYIVRNGEVVIVDEFTGRVLPGRRWSDGLHQAIEAKEHEEIQPETQTLATITYQNLFLLYPKLGGMTGTAKTEEPEFEKIYKLEVAVIPTNRDRRREDL 400          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ANAVT (Protein translocase subunit secA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=secA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 108/204 (52.94%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +PF++ ++DEVDS+L+DE R PL+ISG+  +   +Y  AA++A  L +  HY V+ K  +V LT+EG A AE  L   DL+D  DPWA FV NA+KAKE + +DV YIVRNG+ +I++E TGRV   RRWS+G+HQA+EAKE + IQ ++  +A ITYQ+LF LYPKL GMTGTAKTEE EF +++++ V  +PTN    R DL
Sbjct:  197 RPFNYCVIDEVDSILVDEARTPLIISGQVERPTEKYVQAAEIALTLQKDEHYEVDEKARNVLLTDEGFAQAEELLGVTDLFDPEDPWAHFVFNAIKAKELFLKDVNYIVRNGEVVIVDEFTGRVLPGRRWSDGLHQAIEAKEHVDIQPETQTLATITYQNLFLLYPKLGGMTGTAKTEEAEFERIYKLEVTIIPTNRIRRREDL 400          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_ANASP (Protein translocase subunit secA OS=Anabaena sp. (strain PCC 7120) GN=secA PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 108/204 (52.94%), Postives = 147/204 (72.06%), Query Frame = 2
Query:   44 KPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGLHYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +PF++ ++DEVDS+L+DE R PL+ISG+  +   +Y  AA++A  L +  HY V+ K  +V LT+EG A AE  L   DL+D  DPWA FV NA+KAKE + +DV YIVRNG+ +I++E TGRV   RRWS+G+HQA+EAKE + IQ ++  +A ITYQ+LF LYPKL GMTGTAKTEE EF +++++ V  +PTN    R DL
Sbjct:  197 RPFNYCVIDEVDSILVDEARTPLIISGQVERPTEKYVQAAEIALTLQKDEHYDVDEKARNVLLTDEGFAQAEELLGVTDLFDPEDPWAHFVFNAIKAKELFLKDVNYIVRNGEVVIVDEFTGRVLPGRRWSDGLHQAIEAKEHVDIQPETQTLATITYQNLFLLYPKLGGMTGTAKTEEAEFERIYKLEVTIIPTNRIRRREDL 400          
BLAST of CN189340 vs. ExPASy Swiss-Prot
Match: SECA_TRIEI (Protein translocase subunit secA OS=Trichodesmium erythraeum (strain IMS101) GN=secA PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.067e-57
Identity = 115/218 (52.75%), Postives = 153/218 (70.18%), Query Frame = 2
Query:    5 LAANSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDVARYPVAAKVAELLVQGL-HYTVELKNNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFEMPVIEVPTNLPNIRVDL 655
            +A N E++V R   PF+F I+DEVDSVL+DE R PL+ISG+  +   +Y  AA++A  L +   HY V+ K  +V L++EG A AE  L   DL++  DPWA FV NALKAKE + +DV YIVR+ + +I++E TGRV   RRWS+G+HQA+EAKE + IQ ++  +A ITYQ+ F LYPKLSGMTGTAKTEE EF K++ + V  +PTN P  R DL
Sbjct:  194 MATNMEEVVQR---PFNFCIIDEVDSVLVDEARTPLIISGQVERPSEKYIKAAEIAAALSKEKEHYEVDEKARNVLLSDEGFAEAEQLLAVQDLYNPEDPWAHFVFNALKAKELFIKDVNYIVRDDEVVIVDEFTGRVMPGRRWSDGLHQAIEAKERVDIQPETQTLATITYQNFFLLYPKLSGMTGTAKTEEAEFEKIYNLQVTIIPTNKPTGRKDL 408          
The following BLAST results are available for this feature:
BLAST of CN189340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SECA_THEEB9.325e-6256.16Protein translocase subunit secA OS=Thermosynechoc... [more]
SECA_SYNY38.728e-6053.20Protein translocase subunit secA OS=Synechocystis ... [more]
SECA_SYNJA1.944e-5956.16Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SYNJB3.317e-5955.67Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_CYAP47.389e-5951.61Protein translocase subunit secA OS=Cyanothece sp.... [more]
SECA_GLOVI1.646e-5852.07Protein translocase subunit secA OS=Gloeobacter vi... [more]
SECA_NOSP73.667e-5853.92Protein translocase subunit secA OS=Nostoc punctif... [more]
SECA_ANAVT8.169e-5852.94Protein translocase subunit secA OS=Anabaena varia... [more]
SECA_ANASP8.169e-5852.94Protein translocase subunit secA OS=Anabaena sp. (... [more]
SECA_TRIEI1.067e-5752.75Protein translocase subunit secA OS=Trichodesmium ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189340 ID=CN189340; Name=CN189340; organism=Citrus sinensis; type=EST; length=656bp
CGGTCTTGCTGCAAATAGTGAACAACTTGTGATGAGATGGCCGAAGCCAT
TTCATTTTGCGATAGTTGATGAAGTTGACTCTGTTCTCATTGATGAGGGG
AGAAATCCATTGTTAATAAGTGGTGAGGCTAGTAAAGATGTTGCACGATA
TCCAGTAGCTGCAAAAGTTGCTGAGCTGCTGGTGCAGGGTCTTCATTACA
CTGTGGAACTTAAGAATAATTCAGTCGAATTGACTGAGGAAGGAATAGCT
CTTGCTGAGATGGCTCTTGAAACTAATGATCTATGGGATGAAAATGATCC
TTGGGCAAGATTTGTGATGAATGCTCTGAAAGCTAAGGAGTTTTATCGAC
GGGATGTCCAGTACATTGTTAGGAATGGGAAGGCTCTTATAATTAATGAG
CTGACTGGCAGAGTTGAAGAGAAACGGAGGTGGTCAGAAGGAATTCACCA
AGCTGTAGAGGCTAAAGAGGGCTTAAAGATTCAGGCCGATTCAGTTGTTG
TGGCTCAAATCACATACCAGTCACTGTTTAAGCTCTACCCAAAGCTCTCA
GGGATGACTGGGACTGCAAAAACTGAAGAAAAGGAATTCTTGAAAATGTT
CGAGATGCCGGTTATTGAAGTGCCCACCAATTTGCCAAATATTCGTGTCG
ATTTAC
back to top