CN189337

Overview
NameCN189337
Unique NameCN189337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189337_ssr1 microsatellite CN189337_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11510 contig Csv1_Contig11510:77..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189337 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.663e-39
Identity = 92/186 (49.46%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  104 KVSPFDLMSAIIRGGKXXXXXXXXXXXXXXXXXXX--LDNKEFVMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE-KEGGEW 646
            K+SPF+LMSAI++G K                     L+NKE VMILTTS+AVLIGCVVV I                             D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV+              K +KE + FF LATYGDGEPTDNAARFYKWF E  + G+W
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFYKWFVEGNDRGDW 192
[Close]
BLAST of CN189337 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.842e-28
Identity = 73/144 (50.69%), Postives = 83/144 (57.64%), Query Frame = 2 
Query:  227 VMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXXD--DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTE--KEGGEW 646
            ++I TTS AV++G +V                              D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KVV              KLKKE++VFF LATYGDGEP DNAARFYKWFTE   E G W
Sbjct:   28 LLIATTSAAVVVGLLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIW 171
The following BLAST results are available for this feature:
BLAST of CN189337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO1.663e-3949.46NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU3.842e-2850.69NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L05_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189337 ID=CN189337; Name=CN189337; organism=Citrus sinensis; type=EST; length=648bp
GAGAGAGAGAGGGGTCTTCTCTTCTCCCGTTCCATTTCCACTCGCTCTCC
GACAAATTCATACTATGCAATCATCATCGTCGTCATCAGAATCAGGCACG
ATGAAAGTATCGCCGTTCGACTTGATGTCCGCGATCATTAGAGGTGGCAA
GGTCGATCCGTCCAACGTGTCGTCGTCCGGTTCAGGAGTTGAAGTTGCTT
CGATTGTGCTCGACAATAAGGAGTTCGTTATGATCTTGACCACGTCTATT
GCCGTCCTCATCGGCTGCGTCGTCGTTTTTATTTTGCGGAGATCTAGTAG
CTCCAAGCCAAAGAAGCTTGAGCCGCTCAAGCCTTTGGTTGTTAAAGAGC
CGGAAGTTGAGGTCGATGATGGAAAGCAGAAGGTCACTATCTTCTTCGGT
ACTCAAACTGGCACAGCTGAAGGATTTGCTAAGGCTTTAGCTGACGAAGC
CAGGGCTCGATATGATAAGGCCATTTTTAAAGTCGTCGATATTGATGATT
ACGCCGACGAGGAAGATGAATATGAAGAGAAATTGAAGAAAGAGAATATA
GTATTTTTCTTCTTGGCTACATATGGAGATGGTGAGCCAACCGACAATGC
AGCTAGGTTCTATAAATGGTTTACGGAGAAAGAGGGAGGGGAGTGGTT
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