CN189335

Overview
NameCN189335
Unique NameCN189335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3624 contig Csv1_Contig3624:326..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E131_ARATH (Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.170e-24
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:   65 QTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPTGY*VGKKIGSI 364
            QT+C+A      K LQAA+D+ACG G ++C  IQ G +CY PN ++ HAS+AFNSYYQK+ R +GSCDF G A + T  P +G C FP    VG +  ++
Sbjct:  270 QTYCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFPGSKKVGNRTQTV 369          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.061e-22
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   65 QTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFP 328
            QT+C+A      K LQAA+D+ACG G  DC  + +G +CY+P+ + AH++YAFN+YYQK  + +GSCDF G A V T  P  G C FP
Sbjct:  358 QTFCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGKASGSCDFKGVATVTTTDPSRGTCVFP 445          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.627e-20
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   65 QTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 325
            QT+C A   A  K LQAA+D+ACG G  DC PI++G TCY+P+ + AHA+YAF++YY +      +C+F G A + T  P +G C F
Sbjct:  366 QTYCTAREGADTKMLQAALDWACGPGKIDCSPIKQGETCYEPDNVVAHANYAFDTYYHQTGNNPDACNFNGVASITTTDPSHGTCVF 452          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E13L1_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 1 OS=Arabidopsis thaliana GN=At3g58100 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 39/89 (43.82%), Postives = 57/89 (64.04%), Query Frame = 2
Query:   65 QTWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 331
            + WCVA  NA +  LQ AI++ACG+GGADC PIQ+G  C DP  ++  AS+ FN+YY K   +  +C+F   A + +  P  G C++P+
Sbjct:   39 ELWCVAKNNAEDSSLQTAIEWACGQGGADCGPIQQGGPCNDPTDVQKMASFVFNNYYLKNGEEDEACNFNNNAALTSLNPSQGTCKYPS 127          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   68 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 331
            +WC+A++ A E+ L+ A+D+ACG G  DC  IQ    C+ P+TL +HAS+ FNSY+Q+      +C FGGA   V + P Y KC + T
Sbjct:  368 SWCIASSKASERDLKGALDWACGPGNVDCTAIQPSQPCFQPDTLVSHASFVFNSYFQQNRATDVACSFGGAGVKVNKDPSYDKCIYIT 455          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   71 WCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 325
            +CVA A+A + KL   +++ACG+G A+C  IQ G  CY PN +++HAS+AFN YYQK     G+CDF G A   T+ P Y  C +
Sbjct:  362 FCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAY 446          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   71 WCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 325
            WC+A++ A   +LQ A+D+ACG G  DC  +Q    C++P+T+ +HASYAFN+YYQ+    +  C F GA+  V + P YG C +
Sbjct:  391 WCIASSQASVTELQTALDWACGPGNVDCSAVQPDQPCFEPDTVLSHASYAFNTYYQQSGASSIDCSFNGASVEVDKDPSYGNCLY 475          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   71 WCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPTG 334
            WCV    A  ++LQA++D+ACG G  DC  IQ G  C++PN + +HA+YA N Y+QK  ++   CDF   A V +Q P Y  C +P G
Sbjct:  364 WCVPKKGATNEELQASLDWACGHG-IDCGAIQPGGACFEPNNVVSHAAYAMNMYFQKSPKQPTDCDFSKTATVTSQNPSYNNCVYPGG 450          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   68 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 331
            +WCV      +  LQA +DYACG G ADC P +   +C++P+ + +H +YA NS++QK+ +  GSC+F G A      P Y  C FPT
Sbjct:   20 SWCVCKTGLSDTVLQATLDYACGNG-ADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPT 106          
BLAST of CN189335 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 40/85 (47.06%), Postives = 50/85 (58.82%), Query Frame = 2
Query:   71 WCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 325
            WCVA   A    LQ  I+YACG    DC+PIQ G  C+ PN+L+AHASY  N+YYQ       +CDF G   V +  P YG C++
Sbjct:  377 WCVAKDGANGTDLQNNINYACGF--VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHTDLACDFKGTGIVTSSDPSYGGCKY 459          
The following BLAST results are available for this feature:
BLAST of CN189335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
E131_ARATH3.170e-2449.00Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis ... [more]
E133_ARATH5.061e-2250.00Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E132_ARATH3.627e-2047.13Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13L1_ARATH6.840e-1943.82Glucan endo-1,3-beta-glucosidase-like protein 1 OS... [more]
E1313_ARATH6.840e-1944.32Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E134_ARATH1.167e-1847.06Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E1312_ARATH1.524e-1843.53Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E137_ARATH3.395e-1844.32Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E13L2_ARATH2.874e-1742.05Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13B_WHEAT2.874e-1747.06Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001L04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189335 ID=CN189335; Name=CN189335; organism=Citrus sinensis; type=EST; length=629bp
CGGTTAGACTCAAGTTCCGGTGAGCGGAGGAGGAGGTGGTGACGTGTCGC
CCTCGGCGGCGGGACAGACTTGGTGCGTGGCTAACGCGAATGCTGGTGAG
AAAAAGCTGCAAGCCGCAATTGATTATGCCTGTGGCGAGGGAGGCGCTGA
TTGCCGACCGATTCAAGAGGGCGCCACGTGTTACGATCCTAACACGTTAG
AAGCCCATGCATCGTATGCCTTCAATAGTTATTATCAGAAGCAAGTGCGT
AAGGCTGGATCTTGTGATTTTGGTGGTGCGGCCTACGTGGTCACGCAGGC
TCCTAAATATGGAAAATGCCAGTTCCCAACTGGCTATTGAGTGGGAAAAA
AAATAGGGAGCATTAGCTGATTTGTGGTCGCGGCTTACGATTGGTGATGA
TTTTTTCTGATAGATTTAGAGGATTGGAACATTAATTTTTCTCCCTTGTA
TTTAAATTTTACGCTGAGTGGGTGGGGTTGTTATCAGTTGGTTTGACTCT
AGTGTCAATATGATCAAATCCTTATTGTATTTATTCTAATGATCATGAAT
TTAGTCCATTATTTTATGTGGATACAGATCAGATTATGATGTTGCAGACT
TTATGTTAATGTCATTCGGCATCTTTTTT
back to top