CN189328

Overview
NameCN189328
Unique NameCN189328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3215 contig Csv1_Contig3215:186..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.755e-72
Identity = 137/155 (88.39%), Postives = 141/155 (90.97%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL              ACSIL
Sbjct:   43 FSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKTKKKKSKAQKACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.093e-71
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRKLI APAYIECSSK+QQNVKAVFDAAIRVVL              ACSIL
Sbjct:   43 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.434e-71
Identity = 135/155 (87.10%), Postives = 140/155 (90.32%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEEL+KLIGAPAYIECSSKTQ+NVK VFDAAIRVVL              ACSIL
Sbjct:   43 FSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.434e-71
Identity = 136/155 (87.74%), Postives = 139/155 (89.68%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+TAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAIRVVL              ACSIL
Sbjct:   43 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.060e-70
Identity = 133/155 (85.81%), Postives = 139/155 (89.68%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVVNG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI+LVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIGAPAYIECSSK+Q+NVK VFDAAIRVVL              ACSIL
Sbjct:   43 FSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQPPKQKKKKNKAQKACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 265.003 bits (676), Expect = 2.691e-70
Identity = 132/155 (85.16%), Postives = 139/155 (89.68%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPEL+HYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPISTAQGEELRKLIGA AYIECSSKTQQN+KAVFDAAI+VVL               C+IL
Sbjct:   43 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQPPKQKKKKKKAQKGCAIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.278e-69
Identity = 131/155 (84.52%), Postives = 138/155 (89.03%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN++KKWIPEL+HYAPGVPIILVGTKLDLRDDK F  DHPGAVPI+TAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAI+VVL              +CSIL
Sbjct:   43 FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQPPKQKKKKREAQKSCSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.131e-68
Identity = 131/155 (84.52%), Postives = 137/155 (88.39%), Query Frame = -2
Query:  226 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVLXXXXXXXXXXXXXXACSIL 690
            FSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFF+DHPGAVPI+TAQGEELRK IGAP YIECSSKTQ NVK VFDAAI+VVL              ACSIL
Sbjct:   43 FSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQPPKAKKKKKAQRGACSIL 197          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.477e-68
Identity = 123/136 (90.44%), Postives = 135/136 (99.26%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            FSANV+V+G+T+NLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+SKASYENVSKKW+PEL+HYAPGVPIILVGTKLDLRDDKQFF +HPGAVPISTAQGEEL+KLIGAPAYIECS+KTQQNVKAVFDAAI+VVL
Sbjct:   43 FSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVL 178          
BLAST of CN189328 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.519e-68
Identity = 126/136 (92.65%), Postives = 134/136 (98.53%), Query Frame = -2
Query:  283 FSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIRVVL 690
            FSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPI+T QGEEL+KLIG+P YIECSSKTQQNVKAVFDAAI+VVL
Sbjct:   43 FSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178          
The following BLAST results are available for this feature:
BLAST of CN189328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
RAC1_BETVU3.755e-7288.39Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA1.093e-7188.39Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH2.434e-7187.10Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC11_ARATH2.434e-7187.74Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC6_ARATH2.060e-7085.81Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC5_ORYSJ2.691e-7085.16Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_LOTJA2.278e-6984.52Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC6_ORYSJ1.131e-6884.52Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC3_ARATH1.477e-6890.44Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC5_ARATH2.519e-6892.65Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189328 ID=CN189328; Name=CN189328; organism=Citrus sinensis; type=EST; length=691bp
TTTTTTTTTTTTTTTTTCACAAAAGGTGTGCAACAATGTAATGCATTTCA
ACAATTAGAGCCGATCACAACAATTCCAACAAAACAATACAAAACCACCT
GATGATTCACAGAGAGATCCTCACAGTTTGTCAATTGAGATTTCTTCAAG
AGCATAGGAAGAAAGATGAGGGAGAATTTGAGAAAGGACAGAGGGTCATA
ATCTCTTTACACCTAATTTCAATCACAATATAGAGCAGGCCTTTTGTGCT
TTATTCTTTTTCTTCTTCGTCTTTGGTGGTTGGAGGACAACTCTGATGGC
TGCATCAAATACTGCCTTCACATTCTGCTGTGTTTTTGAACTGCATTCAA
TGTAAGCAGGTGCACCAATCAGCTTCCTCAGCTCCTCCCCCTGAGCTGTA
CTAATGGGCACGGCACCTGGATGATCAATGAAGAACTGCTTATCATCCCG
AAGATCAAGCTTTGTTCCAACAAGGATTATTGGCACACCAGGTGCATAAT
GTTTCAACTCTGGAATCCACTTCTTGGATACATTTTCATAACTTGCTTTG
CTAATAAGAGAGAATGCAAGAATGAAAACATCTGCACCACGGTAACTTAA
AGGTCTTAATCTGTTATAATCCTCTTGTCCAGCAGTATCCCATAATCCAA
GATTAACAGTGCTGCCATTGACAACCACATTTGCACTGAAA
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