CN189323

Overview
NameCN189323
Unique NameCN189323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7581 contig Csv1_Contig7581:306..952. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189323 vs. ExPASy Swiss-Prot
Match: Y1814_ARATH (Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.655e-55
Identity = 113/217 (52.07%), Postives = 139/217 (64.06%), Query Frame = 2
Query:   14 FFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVE------NEASTSKNVLACPICYKPLTWIGDXXXXXXXXXXXXX-QCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGRGLFSRIFAKSGLYSLGVALDYSENMLKQCYE 643
            F +  LP     SR  SVK       +  FV++   +S+A V  + +  S V+      ++    K +LACPICY  L WI                QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG G+FSR+F +S L+SL +ALDYSENML+QCYE
Sbjct:   10 FSTALLPTCFSLSRLHSVKYAAQRRVV--FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYE 224          
BLAST of CN189323 vs. ExPASy Swiss-Prot
Match: Y2104_ARATH (Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 74/150 (49.33%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  197 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGRGLFSRIFAKSGLYSLGVALDYSENMLKQCYEF 646
            V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+    TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCG GLFSR FA+SG YS  +ALDYSENML+QC EF
Sbjct:   78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227          
The following BLAST results are available for this feature:
BLAST of CN189323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1814_ARATH1.655e-5552.07Uncharacterized methyltransferase At1g78140, chlor... [more]
Y2104_ARATH1.192e-3749.33Uncharacterized methyltransferase At2g41040, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K21_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189323 ID=CN189323; Name=CN189323; organism=Citrus sinensis; type=EST; length=647bp
GACGATCAGCAGCTTCTTCTCGGTGTCTCTACCGGGTCGACTCGGTAACT
CGCGACGGTGTTCTGTCAAACCCAATCCTTCGCCGATCTTTATACGCAAG
TTTGTTGCCAAAATTCGGGCTTCTTCAACAGCCTTTGTCGAAACCAAACC
ATCGGAGCCGAGTTTTGTTGAAAATGAAGCAAGTACAAGCAAGAACGTGT
TAGCTTGTCCCATCTGTTATAAACCTCTAACGTGGATTGGTGATTCATCC
TTGTCTATAGAATCTGCAGCTGGGTCTAGTTTGCAATGTAACACTTGTAA
AAAGACTTACAGTGGCGTGGGAACTCATTTTGATATGACTGCGGCTAGTG
GGTCAAAAGATTATGGTGAATTGATGAGTCCTGCCACTGAATTTTTCAGG
ATGCCATTCATGTCATTTATCTATGAAAGGGGCTGGCGTCAAAACTTTGT
ATGGGGTGGTTTTCCAGGCCCAGAGAAGGAGTTTGAATTGATGAAGGGTT
ATCTAAAGCCTGTTTTAGGTGGAAACATCATTGATGCTAGCTGTGGTAGA
GGGCTGTTTTCACGAATTTTTGCTAAGAGTGGATTGTATTCTCTTGGTGT
TGCTCTGGACTATTCAGAGAACATGCTGAAGCAGTGTTATGAATTTG
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