CN189322

Overview
NameCN189322
Unique NameCN189322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189322 vs. ExPASy Swiss-Prot
Match: Y1814_ARATH (Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.189e-41
Identity = 79/115 (68.70%), Postives = 97/115 (84.35%), Query Frame = -3 
Query:  377 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATK 721
            +LVRADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M+ SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATK
Sbjct:  239 VLVRADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIMRYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATK 353
[Close]
BLAST of CN189322 vs. ExPASy Swiss-Prot
Match: Y2104_ARATH (Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.069e-27
Identity = 61/117 (52.14%), Postives = 81/117 (69.23%), Query Frame = -3 
Query:  377 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATK 727
            N  +VRAD+SRLPF S S+DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++   P    P+  ++R    +I  SY +L + EI+D+C +CGL D++      F+MFTA K
Sbjct:  239 NIAVVRADVSRLPFPSGSVDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST--PW--IIRPFQSRILQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARK 351
The following BLAST results are available for this feature:
BLAST of CN189322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1814_ARATH2.189e-4168.70Uncharacterized methyltransferase At1g78140, chlor... [more]
Y2104_ARATH3.069e-2752.14Uncharacterized methyltransferase At2g41040, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189322 ID=CN189322; Name=CN189322; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTTTTTTTTAATCAAAACATTTTAAAATTGAAGTGGAAAAGAAT
TGGAGGTCAATTCTTTGAATTAATAATCTCTTCAAGAATATTAACAAAAA
AAAGTAGGAAAGGTTACAAGAACTCGCCTTCCCTTTATTCCATGCACCCA
ATGATTGGTGTGTGGTATCATCTTTACAGACCTTCACACTATATCACCAA
GCATTCTCTAACCTTACACTACATTCCTATATCACCAAGCATTCTCTTAA
CACAAAAGACAATAATTTATCTTCTGAGACAGTTGGTCCAATAACTGCTT
TTTTGTAGACTCAATAATTTGAGAGCACGGAGCAGAGTGGAGAGCAACTG
CTGATAGGCAGTCAATTTTAGCTGGGTTTTGTAGCAGTAAACATAACAAA
ACCTCTGTTCCTTGTACATTTAAAATCAACCAGGCCGCAGGCTCTGCAGA
GATCTTCTATTTCCCTTTCAGATAGGAAAGTATAGCTGCCTGATATTTGC
ATCATGTTCTGGCGTAGAAGCCTTGAAAATGGAATAAGATTAAAAGGCCC
ATCGACTATGTAGGTGGTGCCAACAAACACTCCTCCAGGTCGTAGAACTC
GACTTATTTCAGCTACGCCTGTTGATGGCGAAGACCAACAGTGTATAGCA
GCACCGGCATGCACTGCATCAATCGAACTTGAAGCAAATGGAAGTCTAGA
GATATCAGCTCTGACCAACAAAAAATTCT
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