CN189321

Overview
NameCN189321
Unique NameCN189321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP11_ARATH (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 7.591e-28
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GYNQHDSQE+LAFLLDGLHEDLN+VK+KPYIE KDS GRPD+EVA E WK HKARNDS+IVDVFQ  + S   C  C
Sbjct:  386 GYNQHDSQEMLAFLLDGLHEDLNKVKRKPYIEAKDSDGRPDDEVAEEKWKYHKARNDSVIVDVFQGQYKSTLVCPDC 462          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP5_ARATH (Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.767e-27
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GYNQHDSQELLAFLLDGLHEDLNRVK KPYI  +D+ GRPDEEVA+E WKNH ARNDS+IVDV Q  + S   C  C
Sbjct:  402 GYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPIC 478          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.096e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GYNQHDSQELLAFLLDGLHEDLN+VK+KPYIE+KDS  RPD+EVA E W  HKARNDS+IVDV Q  + S   C  C
Sbjct:  389 GYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVC 465          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.432e-26
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GYNQHDSQELLAFLLDGLHEDLN+VK+KPYIE+KDS  RPD+EVA E W  HKARNDS+IVDV Q  + S   C  C
Sbjct:  388 GYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPAC 464          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.870e-26
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            G+NQHDSQELLAFLLDGLHEDLNRVK KPY+E KD  GRPD EVA+E W+NH ARNDS+IVDV Q  + S   C  C
Sbjct:  364 GFNQHDSQELLAFLLDGLHEDLNRVKNKPYVEAKDGDGRPDAEVADEYWRNHVARNDSIIVDVCQGQYKSTLVCPIC 440          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP11_HUMAN (Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 3.899e-24
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GY QHDSQELL+FLLDGLHEDLNRVK+K Y+E+ D+ GRPD+EVA E W+NHK RNDS+IVD F     S   C  C
Sbjct:  395 GYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCDAAGRPDQEVAQEAWQNHKRRNDSVIVDTFHGLFKSTLVCPDC 471          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP4_HUMAN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD  VA E W+NH+ RNDS+IVD F     S   C  C
Sbjct:  388 GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPEC 464          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP4_BOVIN (Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus GN=USP4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.685e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD  VA E W+NH+ RNDS+IVD F     S   C  C
Sbjct:  388 GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPEC 464          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP4_PONAB (Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo abelii GN=USP4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.134e-23
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GY Q DSQELLAFLLDGLHEDLNRVK+KPY+E+KD+ GRPD  VA E W+NH+ RNDS+IVD F     S   C  C
Sbjct:  388 GYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDVVVAKEAWENHRLRNDSVIVDTFHGLFKSTLVCPEC 464          
BLAST of CN189321 vs. ExPASy Swiss-Prot
Match: UBP19_RAT (Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus norvegicus GN=Usp19 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.300e-23
Identity = 49/77 (63.64%), Postives = 56/77 (72.73%), Query Frame = 3
Query:    3 GYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQVSHFS*YACAFC 233
            GY QHD+QE +AFLLDGLHEDLNR++ KPY E  DS GRPDE VA E W+ HK RNDS IVD+FQ  + S   C  C
Sbjct:  622 GYAQHDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDEVVAEEAWQRHKMRNDSFIVDLFQGQYKSKLVCPVC 698          
The following BLAST results are available for this feature:
BLAST of CN189321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
UBP11_ARATH7.591e-2875.32Putative ubiquitin carboxyl-terminal hydrolase 11 ... [more]
UBP5_ARATH3.767e-2774.03Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabido... [more]
UBP10_ARATH1.096e-2672.73Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabid... [more]
UBP9_ARATH1.432e-2672.73Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabido... [more]
UBP8_ARATH1.870e-2671.43Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabido... [more]
UBP11_HUMAN3.899e-2466.23Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo s... [more]
UBP4_HUMAN8.685e-2466.23Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sa... [more]
UBP4_BOVIN8.685e-2466.23Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos tau... [more]
UBP4_PONAB1.134e-2366.23Ubiquitin carboxyl-terminal hydrolase 4 OS=Pongo a... [more]
UBP19_RAT3.300e-2363.64Ubiquitin carboxyl-terminal hydrolase 19 OS=Rattus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K20_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189321 ID=CN189321; Name=CN189321; organism=Citrus sinensis; type=EST; length=441bp
ATGGTTATAACCAGCATGATTCTCAGGAACTTCTTGCCTTCTTGCTGGAT
GGACTGCATGAAGATTTGAATCGTGTCAAACAAAAGCCTTATATTGAAAT
GAAGGATTCAGGCGGTCGTCCAGATGAGGAAGTTGCTAATGAATGTTGGA
AAAATCACAAGGCCAGGAATGATTCATTGATTGTGGATGTTTTCCAAGTG
AGTCATTTCTCTTAGTATGCTTGTGCCTTTTGTTTATTGAAAGTTCGGCA
TAATATGCTTGCAGCATGTTTGCACAATTTTATCTAGAAAATAATCTAAG
GCCTATTTGGTATTGAGGTGCTAAGTTGGGGGGGGGTTATGAAATAAAAG
TTGATAGTGTCGGGTAAATATGACTTTCAAATAATAAGTTTGACAAAAAT
GGTAAGGATATTATAGGTTTGTTTTACTTGTGTGGAATAAA
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