CN189318

Overview
NameCN189318
Unique NameCN189318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12936 contig Csv1_Contig12936:1062..1574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.705e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAAARFVESSLRALDGDGDVYEC FVES LT+LPFFASRVK+G+NG+E++I SDLQGLTEYEQKALEALK ELKASI+
Sbjct:  311 YAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALKVELKASID 388          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM_CITLA (Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.267e-18
Identity = 47/78 (60.26%), Postives = 62/78 (79.49%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L+ L+G  DV EC FV+S +TELPFFAS+VKLG+NGVES++  DL  L+++E++ LE LKPELKASIE
Sbjct:  263 YAGALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVL--DLGPLSDFEKEGLEKLKPELKASIE 338          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.214e-18
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L+ L+G  DV EC +V+S +TELPFFAS+V+LG+NGVE ++  DL  L+++E++ LEALKPELK+SIE
Sbjct:  258 YAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEEVL--DLGPLSDFEKEGLEALKPELKSSIE 333          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM2_ARATH (Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.186e-16
Identity = 43/78 (55.13%), Postives = 61/78 (78.21%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L+ L+G  +V EC FV+S +TELPFFAS+V+LG+NGVE ++  DL  L+++E++ LEALK ELK+SIE
Sbjct:  258 YAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVL--DLGPLSDFEKEGLEALKAELKSSIE 333          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.549e-16
Identity = 42/78 (53.85%), Postives = 61/78 (78.21%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L  L+G  DV EC +V+S++TELPFFAS+V+LG+NGVE ++  DL  L+++E++ L+ LKPELK+SIE
Sbjct:  255 YAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASKVRLGKNGVEEVL--DLGPLSDFEKEGLKQLKPELKSSIE 330          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.507e-16
Identity = 40/78 (51.28%), Postives = 61/78 (78.21%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L+ L+G  DV EC +V+S +TELPFFAS+V+LG+NGVE ++  DL  L+++E++ LEAL+P +K++IE
Sbjct:  258 YAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGKNGVEEVL--DLGPLSDFEKEGLEALRPGIKSTIE 333          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.886e-16
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAA +F ++ LR L GD  V EC FV S +TELPFFAS+V+LGRNG+E + S  L  L EYE+  LE  K EL  SIE
Sbjct:  273 YAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKKELAGSIE 348          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YA A F ++ L+ L+G  DV EC FV+S++ TELPFFAS+VKLG+NGVE ++  +L  +++YE++ LE L PELKASIE
Sbjct:  263 YAGALFADACLKGLNGVPDVVECSFVQSSIITELPFFASKVKLGKNGVEEVL--ELGPMSDYEKQGLEILIPELKASIE 339          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.921e-15
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAA +F ++ LR L GD  V EC FV S +TELPFFA++V+LGRNG++ + S  L  L EYE+  LE  K EL  SIE
Sbjct:  273 YAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS--LGPLNEYERIGLEKAKKELAGSIE 348          
BLAST of CN189318 vs. ExPASy Swiss-Prot
Match: MDHG_SOYBN (Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.508e-15
Identity = 41/78 (52.56%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  279 YAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 512
            YAA +F ++ L AL GD  + EC +V S +TELPFFAS+V+LGR GVE ++   L  L +YE+++LE  K EL ASIE
Sbjct:  270 YAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEIL--PLGPLNDYERESLEKAKKELAASIE 345          
The following BLAST results are available for this feature:
BLAST of CN189318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
MDHP_ARATH1.705e-3185.90Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_CITLA1.267e-1860.26Malate dehydrogenase, mitochondrial OS=Citrullus l... [more]
MDHM1_ARATH8.214e-1856.41Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHM2_ARATH1.186e-1655.13Malate dehydrogenase 2, mitochondrial OS=Arabidops... [more]
MDHM_FRAAN1.549e-1653.85Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_BRANA4.507e-1651.28Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHG_CITLA5.886e-1656.41Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHM_EUCGU7.688e-1655.70Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHG_CUCSA2.921e-1553.85Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_SOYBN6.508e-1552.56Malate dehydrogenase, glyoxysomal OS=Glycine max P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189318 ID=CN189318; Name=CN189318; organism=Citrus sinensis; type=EST; length=513bp
TTTTTTTTTTTTCCATAAGAATGCTTATATTTCTTCCGATCTACAACAGC
GATGTACCCACTCAAGACTCCATATTTTGCGCTTTAAAACTTAAAAATGA
GATGAAAACCTCCTGTTCTACAAAAATGAAAGTACTGATGCAAAGAAAAT
TCCACAATTTGAAAAAACCAGACTCATCCATTCTTCTCTAGGGGATGTTA
ATTTCATGAGGTTAGGGTTTCAAATAACTTTCAACCCTATGCAGCTACTG
CTTGCTTCTGCGCAAATGCAACCCCCTTTTCAATACTGGCCTTCAGCTCG
GGTTTAAGGGCTTCCAAAGCCTTTTGTTCATACTCAGTCAACCCTTGGAG
ATCAGATGAAATCAAAGATTCAACACCATTCCTTCCAAGCTTAACCCTAG
ATGCAAAGAACGGAAGCTCAGTCAGATTGGACTCCACGAAAACGCATTCA
TACACGTCCCCATCTCCATCAAGAGCACGAAGTGAAGACTCGACAAATCT
TGCTGCTGCATAT
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