CN189316

Overview
NameCN189316
Unique NameCN189316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189316 vs. ExPASy Swiss-Prot
Match: UBP10_ARATH (Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.162e-15
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = -1 
Query:  648 YAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 800
            YAKLID+N+WYHFDDSHVS V+E +I+ SAAYVLFYRRV+S+T+ + AE S
Sbjct:  857 YAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRVRSETETQTAEMS 907
[Close]
BLAST of CN189316 vs. ExPASy Swiss-Prot
Match: UBP9_ARATH (Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.273e-15
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = -1 
Query:  648 YAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTKAEMAETS 800
            YAKLID+N WYHFDDSHVS V+E +IK SAAYVLFYRRV+S+T+ +  E S
Sbjct:  856 YAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRVRSETETQTVEMS 906
[Close]
BLAST of CN189316 vs. ExPASy Swiss-Prot
Match: UBP11_ARATH (Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = -1 
Query:  669 YAKLIDENRWYHFDDSHVSPVSEGDIKTSAAYVLFYRRVKSKTK 800
            YAKL+DE +WY+FDDS VS V+E +IKTSAAYVLFY+RVKS ++
Sbjct:  842 YAKLMDETKWYNFDDSRVSAVNESEIKTSAAYVLFYQRVKSDSE 885
The following BLAST results are available for this feature:
BLAST of CN189316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
UBP10_ARATH4.162e-1570.59Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabid... [more]
UBP9_ARATH9.273e-1570.59Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabido... [more]
UBP11_ARATH2.792e-1170.45Putative ubiquitin carboxyl-terminal hydrolase 11 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189316 ID=CN189316; Name=CN189316; organism=Citrus sinensis; type=EST; length=803bp
AAACATACATCGTATTAGAATGAATTGCTTGCACCGTCTACATCTGTAAC
ATCTGCAGTAACAGCAACATCATAAAAAAAGAATCTGATGCCTTTTCTAG
AAAAGAACTACGAAATAACAAACGTGTTGCCGTCGCTTTTGCTTTCCACT
GTTCTATATCTATTAATCTACAAAGCGCTGCATAACAGTTATAATCATGT
CACATCTTACGCCAAATTAACATAGTTGTTAACCAGCCAGCCATTGATAA
TAAGTACCAACTCTTCAACCCGAGCTTCTGGCGGACTTGGCGTGAAGATG
GAAACATCTTTTGCTGTAAGGTATATGAGCATAACCATGACTACATCCGG
CAACCTCTAACTCGGGCCAAAAATTTCTCTTTCAAAAAAATGTTAATAAA
TAAACGAACCAATCTCCTTTATCTACCTGCCATGATAGTATCTCATGTTG
TAATTAAAAGATGACCATGCCAATCTCGGTGATCCCCTTGTCTCTAGCCT
GTAGGTTTGTTAGGCTTGCTTGGAATCAAGCATTTGATAATTGGTATAAT
TCACTTGAATAATGAAAGGCATAAACCCACCCAGCTTAACCTTGAAATAG
CAAAATAATAAAATTCAGCAGATTATGCCTTAACAACAATGACCCTGGGA
CGTCTCTGCCATTTCCGCCTTTGTTTTACTTTTAACTCTCCGATAAAATA
ACACATAAGCAGCCGAAGTCTTAATATCTCCCTCACTAACTGGAGAAACA
TGACTATCGTCAAAATGGTACCATCTATTCTCATCAATTAACTTGGCATA
AGG
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