CN189315

Overview
NameCN189315
Unique NameCN189315
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189315_ssr47 microsatellite CN189315_ssr47:47..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5820 contig Csv1_Contig5820:27..772. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.152e-39
Identity = 80/146 (54.79%), Postives = 108/146 (73.97%), Query Frame = -2
Query:  311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742
            R GWV RNV  PES++DHMYRM +M +++ D   +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE   +AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   32 RTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.372e-38
Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = -2
Query:  311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742
            R GWV RNV  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+  + +LL E  R KE+ ELW EYE   + EAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   27 RTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.098e-38
Identity = 78/146 (53.42%), Postives = 107/146 (73.29%), Query Frame = -2
Query:  311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742
            R GWV RNV  PES++DHMYRM +M L+  D   +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+  + +LL E  + KE+ ELW EYE   +AEAK VK  D+ EMILQA EYE+ + K   L++F+ STAGKF
Sbjct:   33 RTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.046e-38
Identity = 78/146 (53.42%), Postives = 107/146 (73.29%), Query Frame = -2
Query:  311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742
            R GWV RN+  PES++DHMYRM +M L + DIS +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++  LL +G R KEI  LW EYE   + EAK+VK+ D  EMI+QA EYE  +GK   L+EFF ST GKF
Sbjct:   19 RTGWVYRNIKQPESVSDHMYRMSMMALTIQDIS-VNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.965e-37
Identity = 73/147 (49.66%), Postives = 108/147 (73.47%), Query Frame = -2
Query:  308 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 742
            R GW+ R V  PES++DHMYRM +M ++  D   +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL +  +  E+ +LW EYE  FTAEAK VK+ D+ EMILQA+EYE  + +   L++F+ STAGKF+
Sbjct:   29 RTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.436e-36
Identity = 89/174 (51.15%), Postives = 106/174 (60.92%), Query Frame = -2
Query:  260 KRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 745
            KR GWV   V  PES++DHMYRM +MG       LI  D   ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI  +   L  G   KEI +LW EYE+  T EA +VKDFDK EMILQA EYE      E    L+ FF ST GKF   L K+ A ++ S RK
Sbjct:   18 KRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDRK 190          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32
Identity = 79/168 (47.02%), Postives = 109/168 (64.88%), Query Frame = -2
Query:  257 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK-FQTELGKAWAAEIVSRRKK 742
            R GW+   +  PESIADHMYRMG++ ++  D S I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA   IT     L    +A+EI EL++EYE   T EAK VKD DK EMI Q  EYE +    KDL +F  + AGK  Q  L K W  +++  R++
Sbjct:   24 RTGWLYHGIEKPESIADHMYRMGILTMLCNDPS-INKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGWLNDVLQEREQ 188          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32
Identity = 73/168 (43.45%), Postives = 111/168 (66.07%), Query Frame = -2
Query:  257 KRAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK 745
            +R G++   +   ESI+DHMYR+ ++ +++ D S ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C  L        AKEI + W+ YE   + EA+ VKD DK EM++Q  EYE E    K+ ++FF + A   +T+  K W +++V +R+K
Sbjct:   62 RRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGWTSDLVVQRQK 227          
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.256e-31
Identity = 70/168 (41.67%), Postives = 107/168 (63.69%), Query Frame = -2
Query:  260 KRAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL----GEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 745
            +R GWV   ++  ESI+DHMYRMGL  +++ D   +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ +     E A ++EI + W+ YE+    E + VKD DK EM++Q  EYE +    KDL++F        +T+  K W   ++  R+
Sbjct:   43 RRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESA-SREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKWTQSLLEDRQ 207          
The following BLAST results are available for this feature:
BLAST of CN189315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HDDC2_HUMAN8.152e-3954.79HD domain-containing protein 2 OS=Homo sapiens GN=... [more]
HDDC2_MOUSE2.372e-3854.79HD domain-containing protein 2 OS=Mus musculus GN=... [more]
HDDC2_BOVIN3.098e-3853.42HD domain-containing protein 2 OS=Bos taurus GN=HD... [more]
HDDC2_DANRE4.046e-3853.42HD domain-containing protein 2 OS=Danio rerio GN=h... [more]
HDDC2_XENLA9.965e-3749.66HD domain-containing protein 2 OS=Xenopus laevis G... [more]
HDDC2_DICDI8.436e-3651.15HD domain-containing protein 2 homolog OS=Dictyost... [more]
YC0H_SCHPO1.945e-3247.02HD domain-containing protein C4G3.17 OS=Schizosacc... [more]
YB92_YEAST5.659e-3243.45HD domain-containing protein YBR242W OS=Saccharomy... [more]
YGK1_YEAST6.256e-3141.67HD domain-containing protein YGL101W OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189315 ID=CN189315; Name=CN189315; organism=Citrus sinensis; type=EST; length=746bp
GACGGTTAACATCATTTTTTCTGGCTGATCGTTATATTACCAAACAAATA
ATAATAATAATAAAACACAATATCCATACAGGAGAGGTAAAAGGAATAGA
GGCTTACAAACTAGCTGCTGCAAAATTTTGCTTATAATGAAATTAACAAT
TAGATCGAGGCAATAATTCAGGACAGGGATTGGCCCTCGAGTAACATGAA
CAAGTCAAAAACTATCTGAAAATTTCAACTAAGGCCTTCTTATGAAAATT
AGTTCACTTTTTTCTCCTTGAAACAATTTCTGCAGCCCAAGCTTTCCCCA
ATTCAGTCTGAAACTTTCCAGCAGTTGACTGGAAAAACTCCTCCAAATCC
TTCCCTTGCTCATTTTCGTACTCTACCGCTTGAAGTATCATCTCCGCCTT
GTCAAAGTCCTTGACTATTTTGGCCTCTGCAGTAAAATTTTCTTCATACT
CCATCCACAACTCATCTATTTCCTTGGCTCTTGCCCCTTCTCCTAATAGT
TTGCACATGTAGGTTATAGCTTCTCGCTCTCGTTGACTCTTTTCTTCCTT
TGGAATTCCATCTGAAGGGGTAATGTCCCCGACAATAGCTTCCGCAATGT
CATGAACAATTGCCATCTTAATGCACTTGTCTCGGTCAATGCCAGAAATG
TCAGCCATAATGAGACCCATCAATCCCATTCTGTACATATGATCAGCTAT
CGATTCTGGATTGTTAACATTTCTCTTTACCCATCCTGCTCTCTTC
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