CN189315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_HUMAN (HD domain-containing protein 2 OS=Homo sapiens GN=HDDC2 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.152e-39 Identity = 80/146 (54.79%), Postives = 108/146 (73.97%), Query Frame = -2 Query: 311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742 R GWV RNV PES++DHMYRM +M +++ D +++D+C+++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL E R KE+ ELW EYE +AEAK VK D+ EMILQA EYE+ + K L++F+ STAGKF Sbjct: 32 RTGWVYRNVQRPESVSDHMYRMAVMAMVIKD-DRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLEHKPGRLQDFYDSTAGKF 175
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_MOUSE (HD domain-containing protein 2 OS=Mus musculus GN=Hddc2 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 2.372e-38 Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = -2 Query: 311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742 R GWV RNV PES++DHMYRM +M ++ D +++D+CI++A+VHD+AE IVGDI P+D IPKEEK +RE EA+ + +LL E R KE+ ELW EYE + EAK VK D+ EMILQA EYE+ + K L++F+ STAGKF Sbjct: 27 RTGWVYRNVEKPESVSDHMYRMAVMAMVTRD-DRLNKDRCIRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPEDLR-KELYELWEEYETQSSEEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 170
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_BOVIN (HD domain-containing protein 2 OS=Bos taurus GN=HDDC2 PE=2 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.098e-38 Identity = 78/146 (53.42%), Postives = 107/146 (73.29%), Query Frame = -2 Query: 311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742 R GWV RNV PES++DHMYRM +M L+ D +++D+C+++A+VHD+AE IVGDI P+D +P+EEK +RE EA+ + +LL E + KE+ ELW EYE +AEAK VK D+ EMILQA EYE+ + K L++F+ STAGKF Sbjct: 33 RTGWVYRNVQKPESVSDHMYRMAVMALVTKD-EHLNKDRCVRLALVHDMAECIVGDIAPADNVPREEKHRREEEAMKQLTQLLPEDLQ-KELYELWEEYETQSSAEAKFVKQLDQCEMILQASEYEDLENKPGRLQDFYDSTAGKF 176
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_DANRE (HD domain-containing protein 2 OS=Danio rerio GN=hddc2 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.046e-38 Identity = 78/146 (53.42%), Postives = 107/146 (73.29%), Query Frame = -2 Query: 311 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKF 742 R GWV RN+ PES++DHMYRM +M L + DIS +++++C+K+A+VHD+AE IVGDI P+D + K EK +RE++A+ ++ LL +G R KEI LW EYE + EAK+VK+ D EMI+QA EYE +GK L+EFF ST GKF Sbjct: 19 RTGWVYRNIKQPESVSDHMYRMSMMALTIQDIS-VNKERCMKLALVHDLAECIVGDIAPADNVSKAEKHRREKDAMVHITGLLDDGLR-KEIYNLWEEYETQSSPEAKLVKELDNLEMIIQAHEYEELEGKPGRLQEFFVSTEGKF 162
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_XENLA (HD domain-containing protein 2 OS=Xenopus laevis GN=hddc2 PE=2 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.965e-37 Identity = 73/147 (49.66%), Postives = 108/147 (73.47%), Query Frame = -2 Query: 308 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQGKD--LEEFFQSTAGKFQ 742 R GW+ R V PES++DHMYRM +M ++ D +++D+CI++A+VHD+AE IVGDI P+D I KEEK ++E+ A+ ++ +LL + + E+ +LW EYE FTAEAK VK+ D+ EMILQA+EYE + + L++F+ STAGKF+ Sbjct: 29 RTGWIYRQVEKPESVSDHMYRMAVMAMLTEDRK-LNKDRCIRLALVHDMAECIVGDIAPADNIAKEEKHRKEKAAMEHLTQLLPDNLKT-EVYDLWEEYEHQFTAEAKFVKELDQCEMILQALEYEELEKRPGRLQDFYNSTAGKFK 173
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: HDDC2_DICDI (HD domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=hddc2 PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 8.436e-36 Identity = 89/174 (51.15%), Postives = 106/174 (60.92%), Query Frame = -2 Query: 260 KRAGWVKRNVNNPESIADHMYRMGLMG-------LIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYEN-----EQGKDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 745 KR GWV V PES++DHMYRM +MG LI D ID+ K IKMA+VHD+ E++VGD TP D I KEEK Q E+ AI + L G KEI +LW EYE+ T EA +VKDFDK EMILQA EYE E L+ FF ST GKF L K+ A ++ S RK Sbjct: 18 KRTGWVNHGVELPESVSDHMYRMAMMGMCLDKKELIGEDGKEIDKMKIIKMALVHDLGESLVGDFTPHDKITKEEKYQLEKNAIIEITNTL-SGEVGKEIFDLWQEYEDCKTNEALLVKDFDKFEMILQAYEYEKQPHQLENKIKLQSFFDSTRGKFHHPLFKSLALQLESDRK 190
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YC0H_SCHPO (HD domain-containing protein C4G3.17 OS=Schizosaccharomyces pombe GN=SPCC4G3.17 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.945e-32 Identity = 79/168 (47.02%), Postives = 109/168 (64.88%), Query Frame = -2 Query: 257 RAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREA---ITYMCKLLGEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGK-FQTELGKAWAAEIVSRRKK 742 R GW+ + PESIADHMYRMG++ ++ D S I++++C+K+A+VHD+AE+IVGDITP + + KEEK + E EA IT L +A+EI EL++EYE T EAK VKD DK EMI Q EYE + KDL +F + AGK Q L K W +++ R++ Sbjct: 24 RTGWLYHGIEKPESIADHMYRMGILTMLCNDPS-INKERCLKIAVVHDMAESIVGDITPHENVSKEEKHRMESEAMVSITQQLIPLNLSLQAEEIKELFLEYESASTPEAKFVKDIDKFEMIAQMFEYERKFNGEKDLSQF--TWAGKLIQHPLVKGWLNDVLQEREQ 188
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YB92_YEAST (HD domain-containing protein YBR242W OS=Saccharomyces cerevisiae GN=YBR242W PE=1 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32 Identity = 73/168 (43.45%), Postives = 111/168 (66.07%), Query Frame = -2 Query: 257 KRAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL---GEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQ--GKDLEEFFQSTAGKFQTELGKAWAAEIVSRRKK 745 +R G++ + ESI+DHMYR+ ++ +++ D S ++RDKC+++A+VHDIAE++VGDITP D I KEEK +RE E I Y+C L AKEI + W+ YE + EA+ VKD DK EM++Q EYE E K+ ++FF + A +T+ K W +++V +R+K Sbjct: 62 RRTGYLDLGIKECESISDHMYRLSIITMLIKD-SRVNRDKCVRIALVHDIAESLVGDITPVDPIGKEEKHRREWETIKYLCNALIKPYNEIAAKEIMDDWLAYENVTSLEARYVKDIDKYEMLVQCFEYEREYKGTKNFDDFFGAVA-SIKTDEVKGWTSDLVVQRQK 227
BLAST of CN189315 vs. ExPASy Swiss-Prot
Match: YGK1_YEAST (HD domain-containing protein YGL101W OS=Saccharomyces cerevisiae GN=YGL101W PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.256e-31 Identity = 70/168 (41.67%), Postives = 107/168 (63.69%), Query Frame = -2 Query: 260 KRAGWVKRNVNNPESIADHMYRMGLMGLIMADISGIDRDKCIKMAIVHDIAEAIVGDITPSDGIPKEEKSQREREAITYMCKLL----GEGARAKEIDELWMEYEENFTAEAKIVKDFDKAEMILQAVEYENEQG--KDLEEFFQSTAGKFQTELGKAWAAEIVSRRK 745 +R GWV ++ ESI+DHMYRMGL +++ D +DR+KCI++A+VHD AE++VGDITP+D + KEEK +RE E + Y+C+ + E A ++EI + W+ YE+ E + VKD DK EM++Q EYE + KDL++F +T+ K W ++ R+ Sbjct: 43 RRTGWVDHGIDPCESISDHMYRMGLTTMLITD-KNVDRNKCIRIALVHDFAESLVGDITPNDPMTKEEKHRREFETVKYLCESIIRPCSESA-SREILDDWLAYEKQTCLEGRYVKDIDKYEMLVQCFEYEQKYNGKKDLKQFL-GAINDIKTDEVKKWTQSLLEDRQ 207 The following BLAST results are available for this feature:
BLAST of CN189315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN189315 ID=CN189315; Name=CN189315; organism=Citrus sinensis; type=EST; length=746bpback to top |