CN189313

Overview
NameCN189313
Unique NameCN189313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2724 contig Csv1_Contig2724:1..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.895e-92
Identity = 179/228 (78.51%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTP-ANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXXWLGMVVAPIELSNFVAGRQEVLPP 684
            AGIEKK+A+LKG+EKAVVARHEAGHAVVGTAVA+LL GQPRVEKLSILPRTGGALGFTY P  +EDRYLLFIDEL GRLVTLLGGRAAEEV YSGRISTGA DDIRRATDMAYKA+AEYGLN+ IGPVS+ATLS GGID+SGG  PWGRDQG+LVDLVQ+EV  LLQSAL+VAL VVRANPDVLEGLGA               WL MVVAP EL+ FV G+QE+L P
Sbjct:  570 AGIEKKSARLKGNEKAVVARHEAGHAVVGTAVANLLTGQPRVEKLSILPRTGGALGFTYIPPTSEDRYLLFIDELLGRLVTLLGGRAAEEVVYSGRISTGAFDDIRRATDMAYKAVAEYGLNQKIGPVSVATLSGGGIDDSGGS-PWGRDQGKLVDLVQKEVTILLQSALDVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVVAPEELAVFVEGKQELLLP 796          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 7.624e-91
Identity = 175/224 (78.12%), Postives = 191/224 (85.27%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTP-ANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXXWLGMVVAPIELSNFVAGRQE 672
            AGIEKK AKLKG+EKAVVARHE GHAVVGTAVA+LLPGQPRVEKLSILPR+GGALGFTYTP   EDRYLLF+DEL GRLVTLLGGRAAEEV  SGR+STGALDDIRRATDMAYKA+AEYGLN+ IGP+S+ATLS+GG+DESGG  PWGRDQG LVDLVQREVKALLQSAL+VAL VVRANP VLEGLGA               WL  VVAP EL++F+ G+QE
Sbjct:  591 AGIEKKHAKLKGNEKAVVARHEVGHAVVGTAVANLLPGQPRVEKLSILPRSGGALGFTYTPPTTEDRYLLFVDELRGRLVTLLGGRAAEEVVLSGRVSTGALDDIRRATDMAYKAVAEYGLNQRIGPISVATLSNGGLDESGGS-PWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVVAPKELTSFIRGKQE 813          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 7.136e-89
Identity = 177/228 (77.63%), Postives = 188/228 (82.46%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTP-ANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXXWLGMVVAPIELSNFVAGRQEVLPP 684
            AGIEKKTA+LKGSEKAVVARHEAGHAVVGTAVASLL GQ RVEKLSILPR+GGALGFTY P  +EDRYLLFIDEL GRLVTLLGGRAAEEV YSGRISTGALDDIRRATDMAYKA+AEYGLN  IGPVS+ATLS+GGID+SGG  PWGRDQG LVDLVQREV  LLQSAL+VAL VVRANPDVLEGLGA               WL  VV   EL+ F+ G+Q  L P
Sbjct:  574 AGIEKKTARLKGSEKAVVARHEAGHAVVGTAVASLLSGQSRVEKLSILPRSGGALGFTYIPPTHEDRYLLFIDELHGRLVTLLGGRAAEEVVYSGRISTGALDDIRRATDMAYKAVAEYGLNEKIGPVSVATLSAGGIDDSGGS-PWGRDQGHLVDLVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVVPSEELAVFIKGKQTALLP 800          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH3_SYNY3 (Cell division protease ftsH homolog 3 OS=Synechocystis sp. (strain PCC 6803) GN=sll1463 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.184e-29
Identity = 77/211 (36.49%), Postives = 114/211 (54.03%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXXWLGMVVAP 636
            AG+EKK+  L   EK +VA HE GHA+VG    +++PG  +V K+SI+PR   ALG+T     EDR+LL   EL  ++ TLLGGRAAEE+ +   I+TGA +D++RATD+A + +  YG+++ +GP++            G G P           +  EVK +++     AL ++  N D+LE +                  LG V AP
Sbjct:  418 AGLEKKSRVLSDKEKKIVAYHEVGHALVG----AVMPGGGQVAKISIVPRGMAALGYTLQMPTEDRFLLNESELRDQIATLLGGRAAEEIVFDS-ITTGAANDLQRATDLAEQMVTTYGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQALAILEHNRDLLEAIAEKILEKEVIEGEELHHLLGQVQAP 623          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_BACPF (Cell division protease ftsH homolog OS=Bacillus pseudofirmus GN=ftsH PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 71/187 (37.97%), Postives = 99/187 (52.94%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRD---QGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            AG  KK+  +   EK +VA HEAGH VVG      L     V K++I+PR G A G+      EDRY +   EL  +++ LLGGR AEEV + G +STGA +D +RAT +A K + EYG++  +GP+         I  SGG V  GRD   +    D +  E+   +Q  ++   C  R    +LE
Sbjct:  408 AGPAKKSRVISPKEKKIVAWHEAGHTVVGVK----LENADMVHKVTIVPR-GMAGGYAVMLPKEDRYFMTQPELLDKIIGLLGGRVAEEVTF-GEVSTGAHNDFQRATGIARKMVTEYGMSEKLGPMQF-------ISGSGGQVFLGRDIQNEQNYSDAIAHEIDLEVQRIIKE--CYARCKQILLE 579          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.733e-21
Identity = 73/188 (38.83%), Postives = 104/188 (55.32%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSG--GIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            AG  KK+  L   E+ VVA HE+GHA+VG     LL     V K+SI PRT  ALGF+      D+YL   ++L  R+   LGGRAAE +++S R+++GA DD+R+ T +AY  + ++G+  +IGPVS      G  GI    G  P+ +   Q++D    E K L+  A      V+  N D L+ L
Sbjct:  554 AGTAKKSKILSKEEQRVVAFHESGHALVGW----LLEHTEAVMKVSIAPRTNAALGFSQM-LPRDQYLFTKEQLFERMCMALGGRAAEAISFS-RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEGLMGI----GRRPFSQGLQQMMD---HEAKLLVAKAYRHTEKVLLDNLDKLQAL 728          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.368e-21
Identity = 63/170 (37.06%), Postives = 97/170 (57.06%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALE 513
            AG+EKK+ ++   EK +VA HE+GHAV+    + +  G  RV K+SI+PR   ALG+T     E++YL+   EL   +  LLGGRAAE+V +   ISTGA +D+ RATD+    ++ YG++   G   +  L        GGG   GR   +  + +  E+ + +++ LE
Sbjct:  420 AGLEKKSRRISPKEKKIVAYHESGHAVI----SEMTKGSARVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEDV-FLQEISTGASNDLERATDIIKGMVSYYGMSDVSG---LMVLEKQRNSFLGGGFGSGR---EFSEKMAEEMDSFIKNLLE 578          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.086e-20
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIG 378
            AG+EKK+ ++   EK +VA HE+GHAV+    + +  G  RV K+SI+PR   ALG+T     E++YL+   EL   +  LLGGRAAEEV +   ISTGA +D+ RATD+    ++ YG++   G
Sbjct:  414 AGLEKKSRRISPKEKKIVAYHESGHAVI----SEMTKGSTRVNKVSIIPRGMAALGYTLNTPEENKYLMQKHELIAEIDVLLGGRAAEEV-FLEEISTGASNDLERATDIIKGMVSYYGMSSVSG 533          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 60/183 (32.79%), Postives = 99/183 (54.10%), Query Frame = 1
Query:    7 GIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLE 555
            G++KK+  ++  E+ ++A HE GHA+ GT       G  +V K++I+PR   ALG+T+    +DR+++   +L   +  LL GRAAE VA+ G +STGA +DI RATD+  K I +YG++     V++    +G + E      +     Q VD    EV  +L       + ++    ++LE
Sbjct:  383 GLQKKSRVIREEERRIIAYHETGHALAGT----FTKGADKVHKITIIPRGTSALGYTFHIPEDDRHIVTEQQLLAEVDVLLSGRAAEFVAF-GEVSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLAREYSECTQQYVD---EEVARVLAERYRAVVALLTEKKELLE 557          
BLAST of CN189313 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.420e-20
Identity = 69/186 (37.10%), Postives = 103/186 (55.38%), Query Frame = 1
Query:    4 AGIEKKTAKLKGSEKAVVARHEAGHAVVGTAVASLLPGQPRVEKLSILPRTGGALGFTYTPANEDRYLLFIDELCGRLVTLLGGRAAEEVAYSGRISTGALDDIRRATDMAYKAIAEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGL 561
            +G  KK+  L   E+ VVA HE+GHA+VG     LL     V K+SI PRT  ALGF+      D+YL   ++L  R+   LGGRAAE +++S R+++GA DD+R+ T +AY  + ++G+  +IGPVS      G +    G  P+ +   Q++D    E + L+  A      V+  N D L+ L
Sbjct:  517 SGTAKKSKILSKEEQRVVAFHESGHALVGW----LLEHTEAVMKVSIAPRTNAALGFSQM-LPRDQYLFTKEQLFERMCMALGGRAAEAISFS-RVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEGLV--GIGRRPFSQGLQQMMD---HEARLLVARAYRHTEKVLLDNLDKLQAL 691          
The following BLAST results are available for this feature:
BLAST of CN189313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
FTSH7_ARATH6.895e-9278.51Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ORYSJ7.624e-9178.13Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH9_ARATH7.136e-8977.63Cell division protease ftsH homolog 9, chloroplast... [more]
FTSH3_SYNY32.184e-2936.49Cell division protease ftsH homolog 3 OS=Synechocy... [more]
FTSH_BACPF1.676e-2137.97Cell division protease ftsH homolog OS=Bacillus ps... [more]
SPG7_MOUSE3.733e-2138.83Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
FTSH_HELFE6.368e-2137.06Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELPJ1.086e-2044.00Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_TREPA1.419e-2032.79Cell division protease ftsH homolog OS=Treponema p... [more]
SPG7_RAT2.420e-2037.10Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189313 ID=CN189313; Name=CN189313; organism=Citrus sinensis; type=EST; length=784bp
GAGGCTGGCATAGAGAAGAAAACTGCAAAGTTAAAGGGGAGTGAGAAGGC
TGTGGTTGCAAGGCATGAAGCTGGTCACGCAGTAGTAGGCACTGCAGTTG
CAAGTCTTCTTCCTGGACAGCCACGTGTCGAGAAACTAAGCATATTGCCA
AGGACAGGAGGGGCACTGGGATTTACTTATACTCCAGCAAATGAGGATAG
ATATCTGCTGTTCATTGATGAGTTATGTGGTCGCCTGGTTACTCTACTTG
GAGGACGTGCAGCAGAAGAAGTTGCTTATTCCGGTCGTATTTCCACTGGT
GCTCTTGATGACATACGGCGAGCAACCGACATGGCGTACAAGGCAATAGC
TGAATATGGTCTTAATCGGACAATAGGCCCTGTGTCTATAGCCACACTTT
CGAGTGGTGGGATTGATGAATCTGGGGGAGGTGTTCCATGGGGAAGAGAT
CAGGGGCAGCTAGTTGACCTTGTACAAAGGGAGGTGAAAGCATTATTGCA
ATCAGCCCTGGAAGTAGCACTCTGTGTTGTTCGTGCTAATCCTGATGTTT
TGGAGGGGCTTGGTGCCTGTCTGGAAGAAAAAGAGAAAGTAGAAGGGGAA
GAGCTGCAAGAATGGTTGGGAATGGTGGTTGCGCCTATAGAACTCTCGAA
CTTTGTTGCTGGCAGACAAGAGGTTCTTCCCCCCTGTACAAGGATCTCTC
CTCCCACTCCAAGGAAGCTCTGGGTAACAATTACTGTTCACTGCTCTACT
CCACATTGAAGCAAAGAGAGCTATCTTACTGCTC
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