CN189312

Overview
NameCN189312
Unique NameCN189312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2724 contig Csv1_Contig2724:348..1097. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189312 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.023e-33
Identity = 76/112 (67.86%), Postives = 86/112 (76.79%), Query Frame = -2
Query:  414 AEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXEWLGMVVAPIELSNFVAGRQEVLPP 749
            AEYGLN+ IGPVS+ATLS GGID+SGG  PWGRDQG+LVDLVQ+EV  LLQSAL+VAL VVRANPDVLEGLGA              +WL MVVAP EL+ FV G+QE+L P
Sbjct:  686 AEYGLNQKIGPVSVATLSGGGIDDSGGS-PWGRDQGKLVDLVQKEVTILLQSALDVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVVAPEELAVFVEGKQELLLP 796          
BLAST of CN189312 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.500e-32
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = -2
Query:  426 AEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXEWLGMVVAPIELSNFVAGRQE 749
            AEYGLN+ IGP+S+ATLS+GG+DESGG  PWGRDQG LVDLVQREVKALLQSAL+VAL VVRANP VLEGLGA              EWL  VVAP EL++F+ G+QE
Sbjct:  707 AEYGLNQRIGPISVATLSNGGLDESGGS-PWGRDQGHLVDLVQREVKALLQSALDVALSVVRANPTVLEGLGAYLEENEKVEGEELQEWLKSVVAPKELTSFIRGKQE 813          
BLAST of CN189312 vs. ExPASy Swiss-Prot
Match: FTSH9_ARATH (Cell division protease ftsH homolog 9, chloroplastic OS=Arabidopsis thaliana GN=FTSH9 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.128e-30
Identity = 72/112 (64.29%), Postives = 80/112 (71.43%), Query Frame = -2
Query:  414 AEYGLNRTIGPVSIATLSSGGIDESGGGVPWGRDQGQLVDLVQREVKALLQSALEVALCVVRANPDVLEGLGACXXXXXXXXXXXXXEWLGMVVAPIELSNFVAGRQEVLPP 749
            AEYGLN  IGPVS+ATLS+GGID+SGG  PWGRDQG LVDLVQREV  LLQSAL+VAL VVRANPDVLEGLGA              +WL  VV   EL+ F+ G+Q  L P
Sbjct:  690 AEYGLNEKIGPVSVATLSAGGIDDSGGS-PWGRDQGHLVDLVQREVTNLLQSALDVALTVVRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVVPSEELAVFIKGKQTALLP 800          
The following BLAST results are available for this feature:
BLAST of CN189312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
FTSH7_ARATH3.023e-3367.86Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH7_ORYSJ1.500e-3268.52Cell division protease ftsH homolog 7, chloroplast... [more]
FTSH9_ARATH3.128e-3064.29Cell division protease ftsH homolog 9, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189312 ID=CN189312; Name=CN189312; organism=Citrus sinensis; type=EST; length=750bp
TTTTTCACTGCTAAAATCGGGAATAATGTATTAACTGAAATAATAGCCAA
TATACAAATGATTTTGAGATTGACCAATGTGTTCACTCATAATGTCAAAA
GAGAAAGACACTTGAGAAGACTAATAAACAGTAAACGTTATGCTTTCCCA
ACCTTATTTCCTCAAGTTTTTCACTATAACATCGTGAGTTAGAACAAAAG
GACAGGCTAGAAGTGTCAAATGAGATCAAATTTACCTCCCTGGAAATTTA
CATAAGTTGTATTGGTGGGTTAATGCCAATACTGCAAGTGTCTGTAGATG
TGATATGAAATGAAGAGCAGTAAGATAGCTCTCTTTGCTTCAATGTTGAG
TAGAGCAGTGAACAGTAATTGTTACCCAGAGCTTCCTTGGAGTGGGAGGA
GAGATCCTTGTACAGGGGGAAGAACCTCTTGTCTGCCAGCAACAAAGTTC
GAGAGTTCTATAGGCGCAACCACCATTCCCAACCATTCTTGCAGCTCTTC
CCCTTCTACTTTCTCTTTTTCTTCCAGACAGGCACCAAGCCCCTCCAAAA
CATCAGGATTAGCACGAACAACACAGAGTGCTACTTCCAGGGCTGATTGC
AATAATGCTTTCACCTCCCTTTGTACAAGGTCAACTAGCTGCCCCTGATC
TCTTCCCCATGGAACACCTCCCCCAGATTCATCAATCCCACCACTCGAAA
GTGTGGCTATAGACACAGGGCCTATTGTCCGATTAAGACCATATTCAGCT
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