CN189308

Overview
NameCN189308
Unique NameCN189308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189308_ssr332 microsatellite CN189308_ssr332:332..343. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  371 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 520
            FVGDSRSSIFDAKAGI L+ +F+K+VSWYDNEWGYSNRV+DLI HMA VA
Sbjct:  287 FVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMASVA 336          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  371 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVA 520
            FVGDSRSSIFDAKAGI LS +F+KLVSWYDNEWGYS+RV+DLI HMA VA
Sbjct:  277 FVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMASVA 326          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FVGDSRSSIFDAKAGI L+  F+KLVSWYDNEWGYSNRV+DLI HMA
Sbjct:  288 FVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMA 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FVGDSRSSIFDAKAGI L+ +F+KLV+WYDNEWGYSNRV+DLI HMA
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.586e-17
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FVGDSRSSIFDAKAGI L+ +F+KLV+WYDNEWGYSNRV+DLI HMA
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.528e-17
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = -1
Query:  341 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALVAAHN*TVKLVC 520
            FVGD+RSSIFDAKAGI L+ +F+KLVSWYDNEWGYS+RV+DLI HM+   +   +V L C
Sbjct:  288 FVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKTTSKLDSVALAC 347          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.625e-16
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = -1
Query:  374 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMALV 520
            FVGDSRSSIFDAKAGI L+ +F+KLVSWYDNEWGYS RV+DLI HMA V
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASV 336          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GD+RSSIFDAKAGI LS +F+KLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  291 FIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMA 337          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.123e-16
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            FVGDSRSSIFDAKAGI LS  F+K+V+WYDNEWGYS+RV+DLI HMA
Sbjct:  288 FVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CN189308 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = -1
Query:  380 FVGDSRSSIFDAKAGIGLSASFMKLVSWYDNEWGYSNRVLDLIEHMA 520
            F+GDSRSSIFDA+AGI LS +F+KLVSWYDNEWGYS+RV+DLI HMA
Sbjct:  291 FIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMA 337          
The following BLAST results are available for this feature:
BLAST of CN189308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
G3PC_PETCR6.598e-1882.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC1.920e-1784.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU5.586e-1785.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ5.586e-1782.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI5.586e-1782.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU9.528e-1766.67Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ANTMA1.625e-1681.63Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI2.123e-1680.85Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL2.123e-1680.85Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY3.621e-1680.85Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189308 ID=CN189308; Name=CN189308; organism=Citrus sinensis; type=EST; length=520bp
TTTTTTTTTTTTTTTTAACAGAAGCACTTGTACAAAATTTATTTAATGAA
TTTAATGCTAACAGAGCAGTTAATAAGCAGGGTTGATGGTTGCATACACA
GCATGGTAAAATGGGGTTCATTATGTAGATGACTAGGATGCCCAGAATCC
AAACAAAGATGGTAGTAGTGGAATGAACTCCATACACTTTGAATATTCTA
TTCCATTATTTTAAAATTTGCATCAAGGGATGTCCAAAGTTCATATTGCG
AGTCACTCAGAACAAAACGCAGAATCACTATCAAATTTTTAACTACTCTT
TCAATCTAACCCAAAAGCATGCACTAAAATTGCAGCAGCAGCAAACCAAT
TTTACTGTTTAGTTGTGGGCCGCTACCAATGCCATGTGCTCGATGAGGTC
CAACACTCGATTGCTGTATCCCCACTCGTTGTCGTACCATGACACAAGCT
TCATGAAGGATGCACTCAATCCAATCCCAGCCTTCGCATCAAATATACTT
GACCTCGAGTCTCCAACAAA
back to top