EY676442

Overview
NameEY676442
Unique NameEY676442
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.956e-35
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            EVLLGGDDGSLAF+P +FSV++GEKI FKNNAGFPHNVVF+E+EIP+GVD SKISMS +DLLN  GE Y+VTL EK    F    PHQG  M G+
Sbjct:   73 EVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCA-PHQGAGMVGK 166          

HSP 2 Score: 36.1946 bits (82), Expect = 8.956e-35
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1
Query:   49 GLKAGATPARVV--GSTMKASASAVPKLSIKATLKDVG 156
            GLKAGA+ +  V  G++ K +A+ V +L++KA+LKDVG
Sbjct:   16 GLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVG 53          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.259e-33
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            +VLLG DDGSLAFVPS FS++ GEKIVFKNNAGFPHN+VF+E+ IPSGVD SKISMS +DLLN  GE + V L  K    F    PHQG  M G+
Sbjct:   71 DVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCS-PHQGAGMVGK 164          

HSP 2 Score: 41.5874 bits (96), Expect = 1.259e-33
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1
Query:   49 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVG 156
            GLKAG+     V ++ K SAS +P+LSIKA++KDVG
Sbjct:   16 GLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVG 51          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.146e-33
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            +VLLG DDGSLAFVPS FSV +GEKIVFKNNAGFPHNV+F+E+ +PSGVDVSKISMS +DLLN  GE + V L +K    F    PHQG  M G+
Sbjct:   71 DVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCS-PHQGAGMVGK 164          

HSP 2 Score: 38.5058 bits (88), Expect = 6.146e-33
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1
Query:   49 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVG 156
            GLKA +     V ++ K SAS +P+LSIKA+LK+VG
Sbjct:   16 GLKAASASNAKVSASAKVSASPLPRLSIKASLKEVG 51          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.042e-32
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            EVLLGG DGSLAF+P  FSV SGE+IVFKNNAGFPHNVVF+E+EIPSGVD +KISMS +DLLN PGE Y VTL EK    F    PHQG  M G+
Sbjct:   71 EVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCS-PHQGAGMVGK 164          

HSP 2 Score: 30.4166 bits (67), Expect = 1.042e-32
Identity = 18/40 (45.00%), Postives = 27/40 (67.50%), Query Frame = 1
Query:   49 GLKAGA----TPARVVGSTMKASASAVPKLSIKATLKDVG 156
            GLKA      T A+++ +T     +AVP+LS+KA+LK+VG
Sbjct:   17 GLKASGSIKPTTAKIIPTT-----TAVPRLSVKASLKNVG 51          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_SILPR (Plastocyanin, chloroplastic OS=Silene pratensis GN=PETE PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.234e-31
Identity = 62/95 (65.26%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            EVLLG  DG LAFVPS  S+ SGEKI FKNNAGFPHNVVF+E+E+P+GVDV+KISM  +DLLN PGE+Y+VTL EK    F    PH G  M G+
Sbjct:   68 EVLLGSSDGGLAFVPSDLSIASGEKITFKNNAGFPHNVVFDEDEVPAGVDVTKISMPEEDLLNAPGEEYSVTLTEKGTYKFYCA-PHAGAGMVGK 161          

HSP 2 Score: 31.187 bits (69), Expect = 3.234e-31
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 1
Query:   49 GLKAGATPARVVGSTMKASASAVPKLSIKATLKDVG 156
            GLKA +T      +T+K  A A P++SIKA+LKDVG
Sbjct:   17 GLKASSTTR---AATVKV-AVATPRMSIKASLKDVG 48          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS2_TOBAC (Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.097e-31
Identity = 67/95 (70.53%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            EVLLG DDG LAFVP +FSV++GEKI FKNNAGFPHNVVF+E+EIP+GVD SKISMS +DLLNGPGE Y+VTL EK    F    PHQG  M G+
Sbjct:    2 EVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDASKISMSEEDLLNGPGETYSVTLSEKGTYTFYCA-PHQGAGMVGK 95          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_RUMOB (Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.774e-30
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            E+ LGGDDG+LAFVP SF+V +GEKIVFKNNAGFPHN+VF+E+E+P+GVD SKISMS +DLLN PGE YAVTL EK    F    PHQG  M G+
Sbjct:    2 EIKLGGDDGALAFVPGSFTVAAGEKIVFKNNAGFPHNIVFDEDEVPAGVDASKISMSEEDLLNAPGETYAVTLSEKGTYSFYCS-PHQGAGMVGK 95          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS1_TOBAC (Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.317e-30
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            EVLLG DDG LAFVP +FSV++GEKI FKNNAGFPHNVVF+E+EIP+GVDVSKISMS ++ LNGPGE Y+VTL EK    F    PHQG  M G+
Sbjct:    2 EVLLGSDDGGLAFVPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAGVDVSKISMSEEEYLNGPGETYSVTLSEKGTYTFYCA-PHQGAGMVGK 95          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.026e-30
Identity = 67/95 (70.53%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            +VLLG DDG LAFVP++FSV SGEKI FKNNAGFPHNVVF+E+EIPSGVD SKISM   DLLN PGE YAVTL EK +  F    PHQG  M G+
Sbjct:    2 DVLLGSDDGELAFVPNNFSVPSGEKITFKNNAGFPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCS-PHQGAGMVGK 95          
BLAST of EY676442 vs. ExPASy Swiss-Prot
Match: PLAS_SAMNI (Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.952e-30
Identity = 65/95 (68.42%), Postives = 75/95 (78.95%), Query Frame = 2
Query:  215 EVLLGGDDGSLAFVPSSFSVNSGEKIVFKNNAGFPHNVVFNENEIPSGVDVSKISMSTKDLLNGPGEDYAVTLIEKKALPFQLGPPHQGTSMGGQ 499
            E+LLGG+DGSLAF+PS+FSV SGEKI FKNNAGFPHNVVF+E+E+PSGVD +KISMS  DLLN PGE Y+VTL E     F    PHQG  M G+
Sbjct:    2 EILLGGEDGSLAFIPSNFSVPSGEKITFKNNAGFPHNVVFDEDEVPSGVDSAKISMSEDDLLNAPGETYSVTLTESGTYKFYCS-PHQGAGMVGK 95          
The following BLAST results are available for this feature:
BLAST of EY676442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PLAS_SOLLC8.956e-3569.47Plastocyanin, chloroplastic OS=Solanum lycopersicu... [more]
PLAS1_POPNI1.259e-3365.26Plastocyanin A, chloroplastic OS=Populus nigra GN=... [more]
PLAS2_POPNI6.146e-3366.32Plastocyanin B, chloroplastic OS=Populus nigra GN=... [more]
PLAS_SPIOL1.042e-3270.53Plastocyanin, chloroplastic OS=Spinacia oleracea G... [more]
PLAS_SILPR3.234e-3165.26Plastocyanin, chloroplastic OS=Silene pratensis GN... [more]
PLAS2_TOBAC6.097e-3170.53Plastocyanin B'/B'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_RUMOB1.774e-3068.42Plastocyanin OS=Rumex obtusifolius GN=PETE PE=1 SV... [more]
PLAS1_TOBAC2.317e-3069.47Plastocyanin A'/A'' OS=Nicotiana tabacum PE=1 SV=1[more]
PLAS_MERPE3.026e-3070.53Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 ... [more]
PLAS_SAMNI3.952e-3068.42Plastocyanin OS=Sambucus nigra GN=PETE PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G02-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676442 ID=EY676442; Name=EY676442; organism=Citrus sinensis; type=EST; length=867bp
ACAATGGCTACTGTCACCTCTGCAGCTGTCACCGTCCCAACTTTCACCGG
CCTTAAAGCCGGTGCAACACCAGCCAGAGTTGTTGGTTCCACCATGAAGG
CCTCAGCCTCTGCTGTCCCAAAGCTCAGCATCAAGGCCACACTCAAAGAT
GTTGGAGTGGCCGTTGCGGCCACAGCTGCCAGCGCAATGCTTGCTAGCAA
TGCCATGGCCATTTGAGGTTTTGCTTGGTGGTGATGATGGGTCCTTGGCT
TTTGTTCCAAGCTCTTTCTCTGTCAACTCCGGTGAAAAGATTGTGTTCAA
GAACAATGCTGGGTTCCCACACAACGTTGTTTTCAATGAAAATGAAATTC
CGAGTGGTGTTGATGTTTCAAAAATCTCCATGTCTACAAAAGACCTTCTC
AATGGTCCTGGAGAAGATTATGCTGTTACTCTGATTGAAAAAAAGGCCTT
ACCCTTCCAACTGGGTCCCCCTCACCAAGGAACTAGCATGGGTGGACAAA
GAGAACGGTAAATTAAGTTTCAAATCAGGAATTTGGTTTGGCCACAACAA
CTTGGTTACCTTTCTCTCCTTTTTGCACTTTAAGAATACCAGACATGATT
TTCATTTTGGGGAAAAAAAATGTTAAGTGGGGGAAACATTTCAACCAAAC
CAAAAAGACCTTTCTGTTATTTCCATTTTTAAAAAAAATAAAGAAAAAAA
AAAAAAAAATAGGGGGGGGCCGCCGCTTAGAGTTCAGAGACTCTAATTAA
GCAGTAGGGAGGCGATATAAGAAAGCCTTCTATAATAAAGCAGCCAATTT
ATAAAATCAATGGAGTGAATTTGTATAAACATAAGACAGAATTGGGGAAA
ACCCGAGGGATTATCGA
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