CN189299

Overview
NameCN189299
Unique NameCN189299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189299_ssr170 microsatellite CN189299_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11271 contig Csv1_Contig11271:108..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189299 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.397e-11
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 1
Query:  280 WWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYXXXXXXXXXXXXTVESEDRWRRIFPMSVVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSF 690
            WW  NV   I NK +     F +P   S +   C S+               T    + W+ +FP++V   I  V   VS+  + VSF   IKS  PA +V++      + F   ++ SL+PI+GG  L ++TEL+F
Sbjct:  104 WWALNVVFNIYNKKVLNA--FPYPWLTSTLSLACGSLMMLVSWATRIADAPKT--DLEFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFFMGETFPLPVYLSLLPIIGGCALAAITELNF 236          
BLAST of CN189299 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 41/137 (29.93%), Postives = 65/137 (47.45%), Query Frame = 1
Query:  280 WWVFNVTVIITNKWIFQKLDFKFPLSVSCIHFICSSIGAYXXXXXXXXXXXXTVESEDRWRRIFPMSVVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSF 690
            WW  NV   I NK +     + +P   S +     S+               T    D W+ +FP++V   I  V   VS+  + VSF   IKS  PA +V++   +  + F   ++ SL+PI+GG  L+++TEL+F
Sbjct:  104 WWALNVVFNIYNKKVLNA--YPYPWLTSTLSLAAGSLMMLISWAVGIVETPKT--DFDFWKTLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFILGETFPTSVYLSLIPIIGGCALSALTELNF 236          
The following BLAST results are available for this feature:
BLAST of CN189299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GPT2_ARATH3.397e-1130.66Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
GPT1_ARATH7.567e-1129.93Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189299 ID=CN189299; Name=CN189299; organism=Citrus sinensis; type=EST; length=767bp
GAGGGTTACTCTCAAGTCTCATCCCATGTATTTTATTCACCTTCCGCTTT
TCGCTACCTTGTTAGCAGCAGCTGCTAAAAGCTGCTACTAATAACTCATA
TGAAATAAACTAAACCCACCAAATTTTAACCGAAAATTTTAGGTGGGTTT
TTGATAAAAAATTATTTGTTTATTATTATTACTATTTTTTTTGTTTATTT
GGTTGATCTGTTTGGAAAAAAAATGGAGGCGAGTTTGTGTACTTGGAGTG
TGTTCAGATCTCTGCTAGCAATTCTTCAATGGTGGGTCTTTAACGTCACT
GTTATTATCACCAACAAGTGGATCTTTCAGAAATTAGATTTCAAGTTTCC
TCTGTCGGTGTCATGTATTCACTTCATATGCTCATCCATTGGAGCATATC
TAGTGATCAAGGTTCTGAAGCTTAAACCCTTGATAACAGTCGAATCTGAA
GATCGATGGAGAAGGATATTTCCTATGTCCGTCGTGTTCTGTATCAACAT
TGTGTTGGGGAATGTGAGCTTACGCTACATTCCTGTTTCTTTTATGCAAA
CAATAAAATCGTTCACTCCTGCAACCACAGTTGTTTTGCAGTGGCTGGTA
TGGAGAAAATATTTTGACTGGCGAATATGGGCTTCTTTGGTGCCCATTGT
TGGAGGAATACTGCTTACATCTGTGACAGAGCTTAGTTTTTAATATGTTT
GGATTTTGTGCTGCATTATTTGGATGTCTGGCCACTTCCACAAAGACTAT
CCTTGCAAAATCTCTGC
back to top