EY676441

Overview
NameEY676441
Unique NameEY676441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY676441_ssr307 microsatellite EY676441_ssr307:307..318. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY676441 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.871e-21
Identity = 66/126 (52.38%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  142 MAEEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTL-----ISSSSV-----------EFVSARETGDGRWRVAAEAEKPTG*RWPLPCQSPAANRRMTCRRREGTWG 471
            MAEEHR Q PRLC NNCGFFGS  TQNLCSKCFRDLQ + Q SS+AKHAL Q+L      +SSSV           E V A+       R AAE E+  G     P Q P   R +TCRRR G  G
Sbjct:    1 MAEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAK----SEKRAAAEPEEADG-----PPQDP--KRCLTCRRRVGITG 115          
BLAST of EY676441 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.614e-15
Identity = 63/160 (39.38%), Postives = 76/160 (47.50%), Query Frame = 1
Query:  142 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSVEFVSARETGDGRWRVAAEAEKPTG*RW------PLPCQSPA----ANRRMTCRRREGTWG----SGQGQVRGRRNPPVPGSCRGVASIQNKGQEQIA 570
            MAEEHRC+ P   RLCVNNCGFFGS  T NLCS C+ DL LK QQ +S K     T+ SS S       E        AAE E PT  +        +P + P+     NR   CR+R G  G     G       R P V G        ++ G+E+IA
Sbjct:    1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMK----STVESSLSPVIAPVLE------NYAAELEIPTTKKTEEKKPIQIPTEQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGC---TFDFKSAGREEIA 147          
BLAST of EY676441 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 39/63 (61.90%), Postives = 43/63 (68.25%), Query Frame = 1
Query:  142 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTLISSSSV 321
            MAEEHRCQ P   RLCVNNCGF GS  T NLCS C+ DL LK QQ SS   ++  T+ SS SV
Sbjct:    1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSS---SIKSTVESSLSV 60          
The following BLAST results are available for this feature:
BLAST of EY676441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAP3_ARATH1.871e-2152.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH7.614e-1539.38Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH1.216e-1261.90Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-022-G01-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY676441 ID=EY676441; Name=EY676441; organism=Citrus sinensis; type=EST; length=836bp
CGGACGCGTGGGCAAACTCCCAATTACCAAACAGAAGACAAAGGCTAATC
CTCCTTATATATTTCCTTTCCAGTCGTCCCTTTTTGAAAAATCAATCAAT
TTCAGCAAATTATTCCTGAAAATATTGTTTACAGGTTGAAGATGGCGGAA
GAGCACAGATGTCAAGCACCCCGTTTGTGCGTGAACAACTGCGGATTTTT
CGGGAGCCCAACAACTCAAAATCTCTGCTCCAAATGTTTTCGCGATCTTC
AGTTGAAAGCACAACAATCTTCCTCGGCCAAACACGCCCTTAACCAAACC
CTGATTTCGTCGTCGTCGGTTGAATTTGTCTCTGCGCGAGAGACCGGCGA
CGGACGTTGGAGGGTAGCGGCAGAGGCGGAAAAACCCACCGGCTGAAGGT
GGCCGCTCCCGTGCCAGTCACCGGCGGCAAACAGGCGCATGACTTGCAGG
AGGCGCGAGGGGACCTGGGGGTCAGGGCAGGGGCAGGTCCGGGGTCGGCG
GAACCCCCCCGTACCGGGAAGCTGCCGCGGGGTAGCTTCGATTCAAAACA
AGGGGCAAGAGCAAATTGCCAGGGAAAGACAGATTAGGAAGATTAAAAAA
AATCAAATTTTATGATTATAGTTATGAGAGGAAGGGAATTACCGCCATAC
CTTGGAGTTTGAATAGAGAAATAAACGAAGCAACAAACAATCTCATACCT
AACCTAAAGGACAGAGGAAAACGAAAAGGTTGGGCGTGAAGAAGGTAATC
ACAAAAACTGGACAATAATGAGACTAAGATGTCACGTCAAGTAGTCAACA
GCTGACTCAACTGGTAAATCAGATATGTATGTGAGA
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