CN189294

Overview
NameCN189294
Unique NameCN189294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7157 contig Csv1_Contig7157:326..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 258.84 bits (660), Expect = 1.572e-68
Identity = 124/133 (93.23%), Postives = 125/133 (93.98%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIANKA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 2.054e-68
Identity = 124/133 (93.23%), Postives = 125/133 (93.98%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 2.682e-68
Identity = 124/133 (93.23%), Postives = 124/133 (93.23%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIA KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 5.975e-68
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGL+WLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 5.975e-68
Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIA+KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 7.804e-68
Identity = 122/132 (92.42%), Postives = 124/132 (93.94%), Query Frame = -3
Query:  228 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANK 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNN+ANK
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.271e-67
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EI  KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIA+K+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 254.603 bits (649), Expect = 2.966e-67
Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG H  RQRHWYIQSTCAT GEGLYEGLDWLSNNI++KA
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 8.628e-67
Identity = 122/133 (91.73%), Postives = 123/133 (92.48%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT K G H  RQRHWYIQSTCAT GEGLYEGLDWLSNNIANKA
Sbjct:   49 IGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CN189294 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 1.472e-66
Identity = 121/133 (90.98%), Postives = 124/133 (93.23%), Query Frame = -3
Query:  225 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQTTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFVNKQDLPNAMNAVEITAKLGFHFFRQRHWYIQSTCATFGEGLYEGLDWLSNNIANKA 623
            IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVF NKQDLPNAMNA EIT KLG +  RQRHWYIQSTCAT GEGLYEGLDWLS+NIA K+
Sbjct:   49 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of CN189294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ARF2_ORYSJ1.572e-6893.23ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH2.054e-6893.23ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH2.682e-6893.23ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN5.975e-6892.48ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ5.975e-6892.48ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE7.804e-6892.42ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA2.271e-6791.73ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA2.966e-6791.73ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO8.628e-6791.73ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE1.472e-6690.98ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189294 ID=CN189294; Name=CN189294; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTTTTCCTTTTTATTTTTTTTTTTTGAGGAAAGATAAACATTCC
AGAATTATTCTGAAGCTACCAAAAACAAATCTCAACGTTTGCAAGGGAAA
CAACAAACACAGTAAAACGGGCAACGAAGCTATTACAGGAAGGAAAGCAA
GAACACTTGAGATGGGTTGTTAACTCTGTATTTCAGCAGTTGCGGCAACC
CAAAACTCAAAATTTAGTTGTCTATGCCTTGTTTGCAATGTTGTTTGAAA
GCCAATCAAGTCCCTCATACAGCCCTTCACCAAAAGTGGCACATGTGCTC
TGGATATACCAGTGGCGCTGGCGAAAAAAGTGAAAGCCAAGCTTGGCAGT
TATCTCAACAGCATTCATTGCATTTGGAAGATCTTGCTTGTTAACAAATA
CAAGCAGCACAGCATCTCTCAATTCATCCTCATTCAACATTCTGTGCAAC
TCATCCCTAGCTTCTACCACACGGTCGCGATCATTACTGTCAACCACAAA
GATGAGTCCTTGGGTGGTTTGGAAATAATGTCTCCACAAAGGTCGGATCT
TGTCTTGACCCCCGACATCCCAGACAGTAAAGCTGATGTTCTTATACTCA
ACGGTCTCTACATTAAATCCAATGG
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