CN189291

Overview
NameCN189291
Unique NameCN189291
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1052..1637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.712e-63
Identity = 111/135 (82.22%), Postives = 121/135 (89.63%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 416
            AGLCLYGNDMEQH TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ++EGP +RRVGFF+ GPP RSHS++ D  G  IGEITSGGFSPCLKKNIAMGYVK+G HKAGT VKI +RGK+YDG +TKMPFVPTKYYKP
Sbjct:  272 AGLCLYGNDMEQHTTPVEAGLTWAIGKRRRAEGGFLGAEVILKQIEEGPKIRRVGFFSSGPPPRSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.712e-63
Identity = 109/136 (80.15%), Postives = 124/136 (91.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            AGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGAE ILKQ+ +GP +RRVG F+ GPPARSHS++ +EQG  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  272 AGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGAEVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 8.766e-63
Identity = 113/136 (83.09%), Postives = 124/136 (91.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            AGLCLYGNDMEQH++PVEAGLTWAIGKRRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:  273 AGLCLYGNDMEQHISPVEAGLTWAIGKRRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.350e-62
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            AGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  272 AGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.350e-62
Identity = 107/136 (78.68%), Postives = 124/136 (91.18%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            AGLCLYGNDMEQH+TPVEAGLTWAIGKRRRAEGGFLGA+ ILKQ+ +GP +RRVG F+ GPPARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  272 AGLCLYGNDMEQHITPVEAGLTWAIGKRRRAEGGFLGADVILKQIADGPAIRRVGLFSTGPPARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.682e-62
Identity = 109/136 (80.15%), Postives = 123/136 (90.44%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 419
            AGLCLYGND+EQH+TP+EAGLTWAIGKRRRAEGGFLGA+ ILKQL +GP +RRVGF + GPP RSHS++ DE GN IGE+TSGGFSPCLKKNIA+GYVKSGLHKAGTKVKI +RGK  +G +TKMPFVPTKYYKPS
Sbjct:  273 AGLCLYGNDLEQHITPIEAGLTWAIGKRRRAEGGFLGADVILKQLADGPSIRRVGFISSGPPPRSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEGVVTKMPFVPTKYYKPS 408          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.072e-60
Identity = 107/134 (79.85%), Postives = 120/134 (89.55%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AGLCLYGND+EQH+TP+EAGLTWA+GKRRRAEGGFLGAE ILKQ+ +GPP RRVGF + GPPAR HS++ +E+G  IGEITSGGFSPCLKKNIAMGYVKSG HKAGTKV I VRGK Y+G +TKMPFVPTKYYK
Sbjct:  273 AGLCLYGNDLEQHITPIEAGLTWAVGKRRRAEGGFLGAEVILKQIADGPPQRRVGFISSGPPARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEGVVTKMPFVPTKYYK 406          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.533e-35
Identity = 70/134 (52.24%), Postives = 92/134 (68.66%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 413
            AG+CLYG+D++   +PVE  L+W IGKRRR EGGF+G+ +ILK+L +GP  RRVGF     PAR H    +  G  +G++TSG  SP L KNIAMGY+ +GLH+ GT   I+VR K +   + +MPFV T YYK
Sbjct:  255 AGMCLYGSDIDDTTSPVEGSLSWIIGKRRRKEGGFVGSSRILKELKDGPSRRRVGFIVEKVPAR-HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNKLHPAQVVRMPFVETHYYK 387          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 2.487e-33
Identity = 69/133 (51.88%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 410
            AGLCLYGND+++  TPVEAGL W +GKRRR    F GA  I++Q+ E P  +RVG  + GPP R  + +   +G P+G +TSG  SP L KNIAMGYV++   + GT + +EVR K +   +TKMPFVPT YY
Sbjct:  257 AGLCLYGNDIDESTTPVEAGLLWTLGKRRRTAMDFPGAAIIMEQVKEKPKRKRVGLTSVGPPLRPPAAILGPEGTPVGTVTSGCPSPSLGKNIAMGYVQAAHSRPGTTLTVEVRKKQHPALVTKMPFVPTHYY 389          
BLAST of CN189291 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.750e-32
Identity = 69/133 (51.88%), Postives = 87/133 (65.41%), Query Frame = 3
Query:   12 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 410
            AGLCLYGND+++H TPVE  L+W +GKRRRA   F GA+ I+ QL      RRVG    G P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K     ++KMPFVPT YY
Sbjct:  268 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEGAPMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYY 400          
The following BLAST results are available for this feature:
BLAST of CN189291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
GCST_SOLTU6.712e-6382.22Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_FLATR6.712e-6380.15Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_ARATH8.766e-6383.09Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_FLAPR4.350e-6278.68Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN4.350e-6278.68Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA5.682e-6280.15Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_MESCR1.072e-6079.85Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_SCHPO4.533e-3552.24Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_CHICK2.487e-3351.88Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_HUMAN2.750e-3251.88Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001K02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189291 ID=CN189291; Name=CN189291; organism=Citrus sinensis; type=EST; length=589bp
CTCCGACTTAAGCTGGCTTATGTTTATATGGTAATGACATGGAACAACAC
GTGACACCTGTAGAAGCTGGACTGACATGGGCCATAGGAAAGAGGAGGAG
AGCAGAAGGTGGCTTTCTAGGTGCTGAGAAAATACTCAAACAACTTGACG
AAGGTCCGCCAGTCAGACGTGTTGGATTCTTCGCTGGAGGTCCGCCTGCC
AGATCACACAGTAAGGTTCACGATGAGCAAGGGAATCCCATTGGAGAAAT
TACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATATAGCCATGGGAT
ATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTAAGATTGAGGTT
CGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCATTTGTGCCAAC
AAAATACTACAAGCCGTCTTAGTACATCTTTGTTGGTTCTGCTTATGGAA
GCTCTACTCGATTCCTGTTTTGACTTGTTTCATAAACATTGACTGCTCGA
GATTACTGTCTTTATTGCTAGCAGTTCTTTAATTCTGCAAATTCTTATGA
TTCTTGTTGCCTGAATAAAAGTGTTTACTTTAAAGCCCT
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