CN189281

Overview
NameCN189281
Unique NameCN189281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:49..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.504e-34
Identity = 69/82 (84.15%), Postives = 77/82 (93.90%), Query Frame = -1
Query:  253 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARL 498
            TNSIASIF W+RGLAHRA LDNN RLLDF EKLEAAC+G VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVA++L+ARL
Sbjct:  329 TNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 4.576e-34
Identity = 69/83 (83.13%), Postives = 78/83 (93.98%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 498
            TNSIASIF W+RGLAHRAKLD+NA+LLDF EKLEAAC+G VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  330 TNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.271e-33
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 498
            TNSIASIF W+RGLAHRAKLD+NA LLDF EKLEAAC+G VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  350 TNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.874e-33
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = -1
Query:  253 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVANDLRARL 498
            TNSIASIF W+RGLAHRA LDNN RLLDF EKLEAAC+G VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVA++L+ARL
Sbjct:  329 TNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.867e-19
Identity = 50/85 (58.82%), Postives = 63/85 (74.12%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVANDLRARLS 498
            TNSIASIF W+RGL +RAKLDNN +LL F   LEA+C+  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA  L ++L+
Sbjct:  326 TNSIASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKLT 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.093e-19
Identity = 48/84 (57.14%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF WSRGLAHRAKLDNN  L  F   LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  327 TNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.093e-19
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF WSRGLAHRAKLDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  327 TNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF WSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  327 TNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.210e-18
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF WSRGLAHRA+LDNN  L  F + LE  C+ T+E+G MTKDLA  I G   + R  YLNT EF+D +  +L+A+L+
Sbjct:  327 TNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CN189281 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 44/83 (53.01%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  250 TNSIASIFVWSRGLAHRAKLDNNARLLDFPEKLEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVANDLRARLS 498
            TN IASIF W+RGL HR KLD    ++DF  KLE+  + TVESGKMTKDLA++I       + +LN+EEF+DA+A++L   L+
Sbjct:  330 TNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
The following BLAST results are available for this feature:
BLAST of CN189281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC3.504e-3484.15Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN4.576e-3483.13Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MEDSA2.271e-3380.72Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_SOLTU3.874e-3384.34Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_DICDI1.867e-1958.82Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_RAT7.093e-1957.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE7.093e-1957.14Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH1.210e-1855.95Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME1.210e-1855.95Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDH_MYCTU4.597e-1853.01Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189281 ID=CN189281; Name=CN189281; organism=Citrus sinensis; type=EST; length=498bp
TTTTTTTTTTTTTTTGGCGCAATAGTTTTGTTTAAACAAGCCATGTTCAA
GACATTTGCTTGCATGAAAATGAGAGTTTGTCGATCAACAGGAAAGCAGT
CTATTGTAGGAATTAGAAGAGAACCAAATCCCAATCCCCAATTTTCCCCT
CTTCAATTATTTCTTCTCAGCATAATATGAAAAAGATAACCAAAGGAAGC
TTCCCCAAGTCTTTACCTTTGAATGTGTAGCATAAAATCATGCTTTGCCA
GAGAGTCTTGCTCTTAGATCGTTGGCCACAGCATCAATGAACTCTTCAGT
ATTCAGATAGTGTTCCCTAGTCATCTTAGATCCATGGATAATAAGTGCAA
GATCCTTGGTCATCTTCCCAGATTCAACAGTGCCAACACATGCAGCTTCT
AGTTTCTCAGGGAAATCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCT
ATGTGCAAGCCCTCGTGACCAAACAAAGATGGAGGCTATGCTGTTTGT
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