CN189270

Overview
NameCN189270
Unique NameCN189270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.735e-23
Identity = 58/130 (44.62%), Postives = 81/130 (62.31%), Query Frame = -2
Query:  119 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNP---APDAVFGPLPE---SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 490
            HSD S +T+L+QD IGGL V  + D  W+ VPP+ GALV+N+GD+LQ+I+NDK+ S+EHRV+AN    R+SV  F +    A   V+GP+ E       P Y+    ++Y  FY SK  DG   + Y +I
Sbjct:  238 HSDNSFLTILLQDHIGGLQV--LHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYAKFYRSKGFDGTSGLLYLKI 365          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.366e-21
Identity = 54/126 (42.86%), Postives = 75/126 (59.52%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP--------ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+NIGD L++I+N KYKS+ HRVVA    NR+S+  F NP  DAV  P P        E  +  IY + VF DY N Y  K  + K+
Sbjct:  181 HTDAGGIILLFQDDKVSGLQL--LKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEEEKKEIYPKFVFQDYMNLYIRKKFEAKE 304          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.366e-21
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP----------ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++D  WI VPP++ ++V+NIGD L++I+N KYKS+ HRVVA    NR+S+  F NP  DAV  P P          E  +  IY + VF DY N Y  K  + K+
Sbjct:  181 HTDAGGIILLFQDDKVSGLQL--LKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEKEEKKKEIYPKFVFQDYMNLYIRKKFEAKE 306          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 48/130 (36.92%), Postives = 79/130 (60.77%), Query Frame = -2
Query:  119 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAP---DAVFGPLPE---SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 490
            H+DI  +T+L+QDD+GGL V  +  + W+ VPP  G+LV+NIGD LQ++SNDKY S+EHR ++N + +R+S+  F   +P     ++GP+ E       P Y+     D+ ++  ++  DG   +   +I
Sbjct:  236 HTDIGFVTILLQDDMGGLQV--LHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHTSYLHNRGLDGTSALSRYKI 363          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.270e-20
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  119 HSDISTITVLIQDDIGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFV-------NPAPDAVFGPLPE---SGEIPIYKQLVFSDYFNFYFSKPHDGKKTIDYARI 490
            HSD   +T+L+QD IGGL +  + ++ WI VP I GALVINI D+LQ+I+NDK+KS+EHRV+ANK+  R+SV +               ++GP+ E       PIYK++   D+    F+K  D   ++   R+
Sbjct:  268 HSDSGFLTILMQDQIGGLQI--LLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDFITIRFAKRFDDSSSLSPFRL 399          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.830e-20
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP----ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD +GGL +  ++D  W+ VPP++ ++V+N+GD L++I+N +YKS+ HRVVA    NR+S+  F NP  DAV  P P    E   +  Y + VF DY   Y     + K+
Sbjct:  183 HTDAGGIILLFQDDSVGGLQL--LKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDYMKLYVRHKFEAKE 302          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.696e-20
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP----ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD +GGL +  ++D  W+ VPP++ ++V+N+GD L++I+N +YKS+ HRVVA    NR+S+  F NP  DAV  P P    E   +  Y + VF DY   Y     + K+
Sbjct:  183 HTDAGGIILLFQDDRVGGLQL--LKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTDGNRMSIASFYNPGSDAVISPAPALVKEEEAVVAYPKFVFEDYMKLYVRHKFEAKE 302          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.827e-20
Identity = 53/123 (43.09%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-----ESGEIPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++DD WI VPP+K ++VIN+GD L++I+N KYKS+ HRVVA     R+S+  F NP  DAV  P P     E  E  +Y + VF DY   Y +     K+
Sbjct:  177 HTDAGGIILLFQDDKVSGLQL--LKDDQWIDVPPMKHSIVINLGDQLEVITNGKYKSVLHRVVAQTDGTRMSIASFYNPGNDAVIYPAPALVEKEVEEKEVYPKFVFDDYMKLYAALKFQAKE 297          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.305e-20
Identity = 52/125 (41.60%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  140 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLPESGE-------IPIYKQLVFSDYFNFYFSKPHDGKK 490
            H+D   I +L QDD + GL +  ++D+ WI VPP++ ++V+NIGD L++I+N KYKS+ HRVVA    NR+S+  F NP  DAV  P PE  E          Y + VF DY   Y  +  + K+
Sbjct:  175 HTDAGGIILLFQDDTVSGLQL--LKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKLYVRQKFEAKE 297          
BLAST of CN189270 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.075e-19
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = -2
Query:  167 HSDISTITVLIQDD-IGGLYVRGIEDDTWIHVPPIKGALVINIGDVLQIISNDKYKSIEHRVVANKIKNRVSVPIFVNPAPDAVFGPLP-----ESGEIPIYKQLVFSDYFNFY 490
            H+D   I +L QDD + GL +  ++D  W+ VPP+K ++V+N+GD L++I+N KYKS+ HRV+A    NR+S+  F NP  DAV  P P     E  +   Y + VF DY N Y
Sbjct:  183 HTDAGGIILLFQDDKVSGLQL--LKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFYNPGSDAVIYPAPTLVEKEEEKCRAYPKFVFEDYMNLY 294          
The following BLAST results are available for this feature:
BLAST of CN189270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCH1_ARATH2.735e-2344.621-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO2_DORSP4.366e-2142.861-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO1_DORSP4.366e-2142.191-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
ACCH3_SOLLC7.447e-2136.921-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
DV4H_CATRO1.270e-2040.30Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
ACCO1_ORYSI2.830e-2040.161-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ3.696e-2040.161-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO_DIOKA4.827e-2043.091-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO_DENCR6.305e-2041.601-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_DIACA1.075e-1942.98Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189270 ID=CN189270; Name=CN189270; organism=Citrus sinensis; type=EST; length=497bp
GGCAGAACGAGACTTTTATTTTGAATTAAGGGATATCATTATTACACTCC
AAAGAAACTGGAATTTCATGCATGGAAAGAAGGCTACTCCCATCCCTATC
GTTATTATTTTCCCATCATATTCTTGCATAGTCAATGGTCTTCTTCCCAT
CATGGGGTTTACTGAAGTAGAAGTTGAAGTAATCTGAGAAAACAAGTTGC
TTGTATATTGGTATCTCTCCACTTTCTGGCAAAGGACCGAAAACGGCATC
AGGTGCAGGGTTCACAAAGATGGGAACTGAAACCCTGTTCTTGATTTTAT
TGGCAACAACTCGATGCTCGATACTTTTGTATTTATCATTGCTTATTATC
TGCAGCACATCACCAATATTAATCACAAGGGCCCCTTTGATTGGAGGGAC
GTGGATCCAGGTGTCATCCTCTATCCCTCTCACGTAAAGCCCACCAATAT
CATCTTGAATAAGAACAGTAATGGTTGATATATCGGAGTGAGGTCCT
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