CN189267

Overview
NameCN189267
Unique NameCN189267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189267_ssr9 microsatellite CN189267_ssr9:9..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6008 contig Csv1_Contig6008:16..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189267 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 89/201 (44.28%), Postives = 123/201 (61.19%), Query Frame = 3
Query:   78 HNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYALDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQSDMRQILGLVSV 677
            ++VKV GSG+  I+ A GFG DQSVW  + P   +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA   +         +E      +  P IA   A+  F SD R+ L  V+V
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTV 209          
The following BLAST results are available for this feature:
BLAST of CN189267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU9.548e-4144.28Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001J07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189267 ID=CN189267; Name=CN189267; organism=Citrus sinensis; type=EST; length=679bp
GCTTTTACAAAAGAAAAGAAAAGAAAAGAAAGCTCCGCAGATTCATGCGA
GGCGAAATGGGAATCGTGGAAGAAGCTCACAACGTGAAAGTGACGGGGTC
AGGGGAGCAAGTGATAGTGTTGGCTCACGGCTTCGGCACCGACCAGTCGG
TGTGGAAGCACCTCGTGCCTCATCTCGTCGACGATTACCGCGTCGTTTTG
TATGACAACATGGGCGCTGGCACCACCAATCCCGACTACTTTGACTTCAA
CAGATACTCCACCCTCGAAGGCTATGCCCTTGATTTGCTTGCTATTTTAG
AAGAGCTGCAAATTGACTCTTGTATTCTCGTCGGTCACTCTGTTTCCGCC
ATGATTGGCGCCATCGCCTCCATCTCCCGCCCTGATCTCTTCACTAAACT
CGTCATGATCTCCGGCTCTCCCAGGTATCTCAATGATGTGGATTACTACG
GAGGATTTGAGCAAGAGGAGCTGGATCAGCTTTTTGAAGCAATGAGGTCA
AATTACAAGGCATGGTGCTCTGGATTCGCCCCGCTAGCTGTCGGCGGGGA
CATGGACTCGGTGGCTGTTCAAGAATTTAGCCGAACCTTATTCAACATGA
GACCAGACATAGCCTTGAGTGTGGCACAAACCATTTTCCAAAGTGACATG
AGGCAAATTCTCGGCCTTGTCAGTGTCCC
back to top