CN189265

Overview
NameCN189265
Unique NameCN189265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189265_ssr262 microsatellite CN189265_ssr262:262..273. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10295 contig Csv1_Contig10295:57..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189265 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 2.292e-12
Identity = 36/98 (36.73%), Postives = 44/98 (44.90%), Query Frame = 2
Query:  179 SEIRDPFKSIRAWLSVSVSPEXXXXXXXXXXXXCLRGSKAKTNCPLDMSTISEENGG-------------FHSIGPVI--RPAASSISSTAESCDSPR 427
            +EIRDP+K  R WL    S E             LRG KAKTN PL  +   + N G             +    P+I  RP +SS+SST ES   PR
Sbjct:   41 AEIRDPWKKTRVWLGTFDSAE-DAARAYDAAARALRGPKAKTNFPLPYAHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQRPTSSSMSSTVESFSGPR 137          

HSP 2 Score: 45.0542 bits (105), Expect = 2.292e-12
Identity = 26/45 (57.78%), Postives = 28/45 (62.22%), Query Frame = 1
Query:   55 RGRTMAAAPNKPIAKRTAPETSLESRYEGVRKRPRGRFAAEIRDP 189
            RGR  AAAP     +      S E R+ GVRKRP GRFAAEIRDP
Sbjct:    3 RGRA-AAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDP 46          
BLAST of CN189265 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 5.265e-11
Identity = 37/107 (34.58%), Postives = 46/107 (42.99%), Query Frame = 2
Query:  179 SEIRDPFKSIRAWLSVSVSPEXXXXXXXXXXXXCLRGSKAKTNCPLDMSTISEENGGFHSIG-----------------------PVI-RPAASSISSTAESCDSPR 427
            +EIRDP+K  R WL    S E             LRG KAKTN P+D S+    N  F+ I                        P++ RP +SS+SST ES   PR
Sbjct:   41 AEIRDPWKKARVWLGTFDSAEEAARAYDSAARN-LRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLFTDHQQQFPIVNRPTSSSMSSTVESFSGPR 146          

HSP 2 Score: 40.4318 bits (93), Expect = 5.265e-11
Identity = 23/45 (51.11%), Postives = 27/45 (60.00%), Query Frame = 1
Query:   55 RGRTMAAAPNKPIAKRTAPETSLESRYEGVRKRPRGRFAAEIRDP 189
            RG +  A P    A   + +   E R+ GVRKRP GRFAAEIRDP
Sbjct:    5 RGSSAVAGPTVVAAINGSVK---EIRFRGVRKRPWGRFAAEIRDP 46          
The following BLAST results are available for this feature:
BLAST of CN189265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ERF3_TOBAC2.292e-1236.73Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF82_ARATH5.265e-1134.58Ethylene-responsive transcription factor 3 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189265 ID=CN189265; Name=CN189265; organism=Citrus sinensis; type=EST; length=648bp
GCGGGTTTCCCACCCTTTACTTCCGATTTTCCTTTCCATTAACTACCCGT
GTGGCGAGGCAGAACCATGGCAGCAGCGCCCAATAAGCCGATAGCGAAAC
GTACCGCACCCGAAACATCGCTCGAGAGCCGATACGAAGGCGTGAGGAAG
CGTCCCAGGGGCAGATTCGCCGCCGAGATCCGAGATCCGAGATCCCTTTA
AGAGTATCCGTGCCTGGCTCAGCGTATCCGTGTCCCCCGAAGACGCCGCG
CGTGCATACGACGCCGCCGCCGCTCGATGCCTCCGTGGGTCCAAGGCCAA
GACCAATTGTCCTCTCGATATGTCTACGATTTCGGAGGAAAATGGAGGGT
TTCACTCGATTGGTCCGGTCATCAGGCCCGCGGCGAGCAGCATTAGTAGC
ACCGCTGAGTCCTGCGATAGTCCCCGGTCAGCGAATCATGTGACGCCACG
TCTCCAGCGGGAGGAGAAGGCCGTCGTGGAATCGTCGTGTTGCGGCTCTA
ATTGAGTCCCAACACGGCGGCAGGGGTGACTATCGGAGCGATTCCGATTC
TTCATCGTCGGATACTGATGATGGTGATGATTGCGTTTTTTTTCTGCATC
GTTGTTCGGGAAAGTCCTGCCGGTTGACCTGAATAGATGGCCTCAATG
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