CN189261

Overview
NameCN189261
Unique NameCN189261
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:187..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.095e-81
Identity = 152/216 (70.37%), Postives = 180/216 (83.33%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQD 738
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP S+TEANTQ+YQQEA+KLRRQIR+IQN NRHI+GE+L +LNFKELKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYLRA+I+E  R              G  VYE        SQ Y+RN++PVNLLEPN Q++ QD
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQ--GTTVYESGVSSHDQSQHYNRNYIPVNLLEPNQQFSGQD 241          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.009e-79
Identity = 152/216 (70.37%), Postives = 177/216 (81.94%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAA-----SQPYDRNFLPVNLLEPNHQYARQD 738
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL++FS+RGRLYEYANNSVR TI+RYKKAC+D+ NP +ITEANTQ+YQQEA+KLRRQIR+IQNLNRHILGE+L +LNFKELKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYLR++I+E                  G VYE        S  Y+RN++ VNLLEPN   + QD
Sbjct:   28 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQ----GTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQD 239          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.713e-74
Identity = 142/213 (66.67%), Postives = 169/213 (79.34%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQD 738
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI+EAN Q+YQQEA+KLR QI  +QN NR++LGE+L+ L+ ++LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YLRA+I+E ERA             G   YE  P   Q   RN+L VN L+ N+ Y RQD
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQD 241          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 9.145e-73
Identity = 137/213 (64.32%), Postives = 167/213 (78.40%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYE--PAASQPYDRNFLPVNLLEPNHQYARQD 738
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFS+RGRLYEYANNSV+ATI+RYKKAC+DSSN GS++EAN Q+YQQEA+KLR QI  + N NR+++GEAL+ +  KELKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YLRA+I+E ERA               + +E  P   Q   RN+L VN L+ N+ Y RQD
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQD 241          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.037e-72
Identity = 138/215 (64.19%), Postives = 169/215 (78.60%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQDDQA 747
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFS+RGRLYEYANNSV+ TI+RYKKAC DS N  S++EAN QFYQQEA+KLR++I  IQ  NR+++GE+L +L  ++LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YLRA+I+ENERA             G   YE A  Q +D RN++ +N L+PN+ Y+RQD  A
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMP-----GSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQDQTA 238          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.725e-71
Identity = 139/213 (65.26%), Postives = 168/213 (78.87%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYE-PAASQPYD-RNFLPVNLLEPNHQYARQD 738
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV+ATI+RYKKAC+DSSN GSI EAN Q+YQQEA+KLR QI  +QN NR+ LGE+L+ LN ++L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YLRA+I+E ER+             G   Y+     Q +D RN+L VN L+ N+ Y RQD
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLMP------GSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQD 235          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.396e-67
Identity = 126/212 (59.43%), Postives = 166/212 (78.30%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAASQPYD-RNFLPVNLLEPNHQYARQ 735
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV++T++RYKKA +D+SN G++ E N Q YQQE++KLR+QI  +QN N R I+G++++T++ ++LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYLR+++ ENER                  Y+   + PYD RNFL VN+++    YA Q
Sbjct:   13 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERG---QQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQ 221          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 7.498e-67
Identity = 136/225 (60.44%), Postives = 166/225 (73.78%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQYA---RQDDQA 747
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RLE+ I R+RSKKNE+L +EI++M+KRE+ L NDN  LRA+I+ENER              GG  YE         SQP+D RN+  V  L+P NH Y+   RQD  A
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER-----NNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTA 248          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 4.860e-66
Identity = 133/223 (59.64%), Postives = 165/223 (73.99%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYE------PAASQPYD-RNFLPVNLLEP-NHQY--ARQDDQ 744
            NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN GS+ E N Q+YQQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  LRA+I+ENER              GG  YE          QP+D RN+  V  L+P NH Y  A ++DQ
Sbjct:   29 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENER-----NNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQ 246          
BLAST of CN189261 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.258e-63
Identity = 121/215 (56.28%), Postives = 162/215 (75.35%), Query Frame = 1
Query:  106 NTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATIDRYKKACADSSNPGSITEANTQFYQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYLRARISENERAXXXXXXXXXXXXGGGHVYEPAASQ-PYD-RNFLPVNLLEPNHQYARQDDQ 744
            NTTNRQVTFCKRR+GLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+NNSV+ TI+RYKKA +D+SN  ++ E N Q YQQEA KL++QI  +QN NR ++G+ ++T+N +ELK LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL+++++E+ER             G     E   +   YD RNFL  N++     Y  Q+D+
Sbjct:   55 NTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERG-----LQTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQEDR 264          
The following BLAST results are available for this feature:
BLAST of CN189261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AGL1_ARATH4.095e-8170.37Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL5_ARATH1.009e-7970.37Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AG_TOBAC3.713e-7466.67Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC9.145e-7364.32Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PANGI2.037e-7264.19Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_PETHY1.725e-7165.26Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MADS3_ORYSJ4.396e-6759.43MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AG_ARATH7.498e-6760.44Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_BRANA4.860e-6659.64Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
MAD58_ORYSJ2.258e-6356.28MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189261 ID=CN189261; Name=CN189261; organism=Citrus sinensis; type=EST; length=770bp
GCGGGTAAGTTACCAGCAACCATGGAGTTTCCAAAACAAAACCCTTAAAG
CTCAAGCCAAAGCAAGAAAATAGGAAGAGGCAAAATTGAGATAAAGCGGA
TCGAGAACACAACAAACAGACAAGTCACCTTCTGTAAACGCCGCAATGGA
TTGTTGAAGAAAGCTTATGAACTGTCTGTCTTGTGTGATGCTGAAGTTGC
TCTCATCGTCTTCTCTAGCCGTGGCCGCCTTTATGAATATGCTAACAACA
GTGTCAGAGCAACAATTGACAGGTACAAGAAAGCATGTGCCGATTCTTCT
AACCCAGGATCTATTACTGAAGCTAACACTCAGTTTTACCAGCAAGAAGC
CACAAAACTACGAAGACAAATCCGGGAGATTCAGAATTTGAACAGGCACA
TTCTGGGTGAGGCCCTCAGCACTTTAAACTTTAAGGAGCTCAAGAACCTT
GAGGCAAGACTTGAGAAGGGAATCGGCAGAGTCAGATCCAAGAAGAACGA
AATGTTATTAGCTGAAATCGAGTTCATGGAGAAGAGGGAAATTCAGCTTC
AAAATGATAACATGTACCTGAGAGCAAGGATATCTGAAAATGAGAGAGCA
CAACAAGAACGGCAATCAGAAAGCATGATGCAGCAAGGAGGAGGGCATGT
GTACGAGCCCGCGGCTTCACAGCCCTATGACCGAAACTTCCTTCCTGTAA
ACCTCTTGGAACCCAATCACCAGTACGCTCGCCAAGACGATCAGGCCCCC
TCTTCAACTTGTTTTGAATT
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