CN189259

Overview
NameCN189259
Unique NameCN189259
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:20..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.808e-67
Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVVIADKFAADANSKVVPA+ IPDGWMGLD+GPDAIKSF  ALDTTKT+IWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLA+KMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct:  267 LPTDVVIADKFAADANSKVVPASEIPDGWMGLDIGPDAIKSFGSALDTTKTVIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.729e-65
Identity = 121/135 (89.63%), Postives = 132/135 (97.78%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+ADKFAADA SK+VPATAIPDGWMGLDVGPD+IK+F+EALDTTKT+IWNGPMGVFEF+KFAAGT+AIAK+LAEL+GKGVTTIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGK LPGVLALD+A
Sbjct:  267 LPTDVVVADKFAADAESKIVPATAIPDGWMGLDVGPDSIKTFAEALDTTKTVIWNGPMGVFEFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.554e-63
Identity = 116/135 (85.93%), Postives = 130/135 (96.30%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LP+DVVIADKFA DANSK+VPA+AIPDGWMGLD+GPD++K+F++ALDTTKT+IWNGPMGVFEFDKFA GTEAIAKKLA+LSGKGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  341 LPSDVVIADKFAPDANSKIVPASAIPDGWMGLDIGPDSVKTFNDALDTTKTVIWNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEA 475          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.073e-61
Identity = 115/135 (85.19%), Postives = 129/135 (95.56%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVVIADKFAADA+SK+VPA+ IPDGWMGLD+GPD+IK+FSEALDTT+T+IWNGPMGVFEF+KFAAGTEAIAKKL E+S KG TTIIGGGDSVAAVEKVG+A+ MSHISTGGGASLELLEGK LPGVLAL++A
Sbjct:  294 LPTDVVIADKFAADADSKIVPASGIPDGWMGLDIGPDSIKTFSEALDTTQTVIWNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.078e-61
Identity = 113/134 (84.33%), Postives = 128/134 (95.52%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 407
            LP+DV+IADKFA DANS+ VPA+AIPDGWMGLD+GPD++K+F++ALDTT+TIIWNGPMGVFEFDKFA GTE+IAKKLAELS KGVTTIIGGGDSVAAVEKVG+AD MSHISTGGGASLELLEGK LPGV+ALD+
Sbjct:  338 LPSDVIIADKFAPDANSQTVPASAIPDGWMGLDIGPDSVKTFNDALDTTQTIIWNGPMGVFEFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 471          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.643e-60
Identity = 113/135 (83.70%), Postives = 126/135 (93.33%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+ADKFA DANSK+VPA+ I DGWMGLD+GPD+IK+F+EALDTT+T+IWNGPMGVFE +KFAAGTEAIA KLAELS KGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  339 LPTDVVVADKFAPDANSKIVPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEA 473          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.958e-57
Identity = 110/135 (81.48%), Postives = 116/135 (85.93%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDV++AD FA DANS+V   TAIPDGWMGLD+GPDAIK F  AL   KT+IWNGPMGVFEFDKFAAGT AIA  LAELSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  267 LPTDVLLADNFAPDANSQVADVTAIPDGWMGLDIGPDAIKVFQAALADCKTVIWNGPMGVFEFDKFAAGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.357e-56
Identity = 105/135 (77.78%), Postives = 120/135 (88.89%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD FAADAN++ V   +IPDGWMGLD+GPDA+K+F EAL   KT+IWNGPMGVFEFDKFA GTEAIA  LA L+GKG +TIIGGGDSVAAVEKVG+A++MSHISTGGGASLELLEGK LPG++ALDDA
Sbjct:  272 LPTDVVVADAFAADANAQTVSVESIPDGWMGLDIGPDAVKTFQEALSDCKTVIWNGPMGVFEFDKFAVGTEAIAHSLAGLTGKGASTIIGGGDSVAAVEKVGVAEQMSHISTGGGASLELLEGKELPGIVALDDA 406          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.158e-56
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD FA DANS+V   TAIPDGWMGLD+GPDA+K F +AL   +T+IWNGPMGVFEF+KFA GT AIA  LAELSGKG  TIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  267 LPTDVVLADNFAPDANSQVADVTAIPDGWMGLDIGPDAVKVFQDALGDCQTVIWNGPMGVFEFEKFATGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKVLPGVAALNDA 401          
BLAST of CN189259 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.158e-56
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 3
Query:    6 LPTDVVIADKFAADANSKVVPATAIPDGWMGLDVGPDAIKSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 410
            LPTDVV+AD FA DANS+ V    IPDGWMGLD+GPD++K F EAL  TKT+IWNGPMGVFEFDKFAAGTEAIA  LAE+   G TTIIGGGDSVAAVEKVGLAD+MSHISTGGGASLELLEGK LPG+ ALDDA
Sbjct:  266 LPTDVVLADNFAPDANSQTVSIENIPDGWMGLDIGPDSVKFFQEALADTKTVIWNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDDA 400          
The following BLAST results are available for this feature:
BLAST of CN189259 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC3.808e-6794.07Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKY_WHEAT2.729e-6589.63Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_TOBAC2.554e-6385.93Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_SPIOL1.073e-6185.19Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_WHEAT4.078e-6184.33Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGKH_ARATH2.643e-6083.70Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]
PGK_SYNS37.958e-5781.48Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_CYAP41.357e-5677.78Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNPX5.158e-5679.26Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_NOSP75.158e-5679.26Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001J03_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189259 ID=CN189259; Name=CN189259; organism=Citrus sinensis; type=EST; length=713bp
GCGGGCTCCCTACTGATGTTGTTATTGCTGACAAGTTTGCTGCTGATGCC
AACAGCAAGGTGGTGCCAGCAACGGCAATTCCAGATGGTTGGATGGGCTT
GGATGTTGGACCTGATGCCATCAAGTCATTCAGTGAAGCTTTGGATACTA
CTAAAACCATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAA
TTTGCTGCTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGG
GAAGGGAGTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAG
AGAAGGTTGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGA
GCCAGCTTAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCT
TGATGATGCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCAT
TTCCAGAGTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTT
AAACTTTATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAA
ATTCTTTCTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCC
ATTTTGGAACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTC
TTGTTCCTTTCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCAT
GAATCCTGGCACT
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