CN189254

Overview
NameCN189254
Unique NameCN189254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189254_ssr340 microsatellite CN189254_ssr340:340..351. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1647 contig Csv1_Contig1647:895..1590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.499e-39
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDP++YVYPNLKYVGIELWQVKSGT+FDNVL+ +DPEYA +LAEETWGK+
Sbjct:  275 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPEIYVYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKN 352          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.763e-38
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            G WKPKKIKNPN+KGKWKAPMIDNPDFKDDPD+YV+P LKYVGIELWQVKSGTMFDNVL+ DDP+YA KLAEETWGK+
Sbjct:  277 GEWKPKKIKNPNFKGKWKAPMIDNPDFKDDPDIYVFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKN 354          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            G WKPKKIKNP YKGKWKAPMIDNP+FKDDP+LYV+P LKYVG+ELWQVKSG++FDNVLVSDDPEYA KLAEETWGKH
Sbjct:  277 GEWKPKKIKNPAYKGKWKAPMIDNPEFKDDPELYVFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKH 354          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.154e-38
Identity = 65/77 (84.42%), Postives = 73/77 (94.81%), Query Frame = -3
Query:  467 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 697
            GPWKPKKIKNPNYKGKWKAP+IDNPDFKDDPDLYV+P LKYVG+ELWQVKSGT+FDN+++ DDPEYA  +AEETWGK
Sbjct:  282 GPWKPKKIKNPNYKGKWKAPLIDNPDFKDDPDLYVFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGK 358          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = -3
Query:  467 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 697
            GPWK KKIKNPNYKGKWKAPMIDNP+FKDDP+LYVYP L+YVG+ELWQVKSGT+FDNVLV DDPEYA +LAEETWGK
Sbjct:  280 GPWKAKKIKNPNYKGKWKAPMIDNPEFKDDPELYVYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGK 356          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.791e-37
Identity = 65/77 (84.42%), Postives = 75/77 (97.40%), Query Frame = -3
Query:  467 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 697
            G WKPKKIKNPN+KGKWKAP+IDNP+FKDDP+LYVYPNLKYVGIELWQVKSGT+FDN+L++D+PEYA +LAEETWGK
Sbjct:  279 GEWKPKKIKNPNFKGKWKAPLIDNPEFKDDPELYVYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGK 355          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 9.826e-36
Identity = 62/77 (80.52%), Postives = 73/77 (94.81%), Query Frame = -3
Query:  467 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGK 697
            G WKPK+IKNPNYKGKW+AP+IDNPDFKDDP+LYV+P LKYVG+ELWQVKSG++FDNVL+ DDP+YA KLA+ETWGK
Sbjct:  277 GEWKPKQIKNPNYKGKWEAPLIDNPDFKDDPELYVFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGK 353          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 3.161e-34
Identity = 61/78 (78.21%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            GPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN L++DDPE A   AEETWGKH
Sbjct:  284 GPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKH 361          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.197e-34
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            GPWK KKIKNPNY+GKWKAPMIDNPDFKDDP +Y + +LKY+GIELWQVKSGT+FDN++++DDP  A   AEETWGKH
Sbjct:  280 GPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 357          
BLAST of CN189254 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.774e-28
Identity = 49/78 (62.82%), Postives = 65/78 (83.33%), Query Frame = -3
Query:  464 GPWKPKKIKNPNYKGKWKAPMIDNPDFKDDPDLYVYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYANKLAEETWGKH 697
            GPWK K+IKNPNYKGKWK P IDNP+F+DDPDLYV  ++KY GIE+WQVK+G++FDN+L+ DDP YA  + ++ + +H
Sbjct:  283 GPWKAKRIKNPNYKGKWKNPWIDNPEFEDDPDLYVLKSIKYAGIEVWQVKAGSIFDNILICDDPAYARSIVDDYFAQH 360          
The following BLAST results are available for this feature:
BLAST of CN189254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
CALR_RICCO2.499e-3988.46Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BERST2.763e-3887.18Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR1_ARATH4.712e-3887.18Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_NICPL6.154e-3884.42Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_BETVU1.371e-3787.01Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR_PRUAR1.791e-3784.42Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR2_ARATH9.826e-3680.52Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_ORYSJ3.161e-3478.21Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE9.197e-3475.64Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR3_ARATH5.774e-2862.82Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I24_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189254 ID=CN189254; Name=CN189254; organism=Citrus sinensis; type=EST; length=699bp
TTTTTTTAGCTCAATGTCCAAGTATATTCATAAATGTGTCCATAAAAAGC
CCTATATATTTCAATCCTCTTTGTTCTAAAAGCTCAGATAGTCATAATGA
GATTTAAGCAATGATCGGCCACACAAATTTTAAACGCAGCCTTTCTTTCT
ACTCTTCAGGTCACTTTCCTAAAGCATAAACGTCCCTAGAGCTGAAAATC
AAAATAGAAAACAGAAAAATTTTGGAGCATCTTTACGCCCAAATTCTCGG
GGCTTATCATAGCATTTTCCCCTACAGCTCATCATGTACATCCTTGTCTG
CGTCTCCGCTGCTGGAGTCTGATTTGGTTTCAGTATCAGCATCATCATCA
TCTTCAGTGTCATCGTCATCATTATCCTCAGCATCAGAATCAGGTGCGTC
CTTTGATTCCTCCTCCTCTCTCTTCTTCTCGGCCTCATCAAATGCTGCCT
TCTCGGCATCCTTATGCTTTCCCCATGTTTCTTCGGCCAACTTATTGGCA
TACTCTGGATCATCACTAACCAAGACATTGTCAAACATGGTTCCAGATTT
CACCTGCCACAACTCAATGCCAACATACTTCAAGTTGGGATACACATAAA
GGTCTGGGTCATCCTTGAAATCTGGGTTGTCAATCATTGGAGCCTTCCAC
TTGCCCTTGTAATTAGGGTTCTTAATTTTCTTTGGCTTCCATGGACCCT
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