CN189252

Overview
NameCN189252
Unique NameCN189252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10115 contig Csv1_Contig10115:648..1383. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: HT1_ARATH (Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 45/113 (39.82%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  380 GETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVAE-GHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEK----IKETLPTDHH 703
            G  G+YR+MAPE+ K + Y +KVDV+SF ++L+E+     P     P  AA  VAE   RP   A    P L  L ++CW+ + ++RP F +I+  LEK    +KE LP   H
Sbjct:  245 GNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPA-SCQPALAHLIKRCWSENPSKRPDFSNIVAVLEKYDECVKEGLPLTSH 356          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: Y9963_DICDI (Probable serine/threonine-protein kinase DDB_G0272254 OS=Dictyostelium discoideum GN=DDB_G0272254 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 38/96 (39.58%), Postives = 56/96 (58.33%), Query Frame = -1
Query:  410 GSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVA-EGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEK 694
            G+  + APE+ +H  Y++K DV+S+A++LYE+L GE P     P +A   VA +G RP        P  ++L   CW+ D N+RPSF +I   L K
Sbjct: 1235 GTVAWTAPEILRHESYNQKADVYSYAIVLYELLTGEEPYQGIPPMNAGILVASKGLRPEL-PDNCDPNWKKLVVWCWSEDPNKRPSFEEITNYLTK 1329          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: ROCO4_DICDI (Probable serine/threonine-protein kinase roco4 OS=Dictyostelium discoideum GN=roco4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = -1
Query:  404 NSHDVYKMTGETGSYRYMAPEVF--KHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYV----AEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIK 730
            +   V+ ++G  G++++MAPE    +   Y +K D +SFAMILY +L GE P   Y  Y   K++     EG RP    +   P LR + E CW+ D  +RP F  I+K L +++
Sbjct: 1181 SQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS-YGKIKFINMIREEGLRPTI-PEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSELR 1293          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: YTYK2_DICDI (Probable tyrosine-protein kinase DDB_G0283397 OS=Dictyostelium discoideum GN=DDB_G0283397 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = -1
Query:  404 KMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIK 712
            +MT   GS  +MAPE FK   Y +KVDV+SFA+IL+E++    P    EP   A ++A          GF P   EL  KCW    + RPSF +IL+ L +I+
Sbjct:  339 EMTAAMGSLAWMAPECFKAENYTEKVDVYSFAIILWEIVTCRDPYNGMEPLRLA-FLASVEDYRLPLNGFPPYWVELISKCWNITPSLRPSFKEILQILNQIE 440          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: LIMKA_DICDI (Probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 OS=Dictyostelium discoideum GN=DDB_G0287001 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  395 KMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIKETL 712
            +MT   G+  YM+PE+FK   YD+  DV++F ++L+E++  + P  N   +     VA+G RP   A     E  +L + CW     +RPSF +I   L+KI E+L
Sbjct:  539 QMTLNLGTSCYMSPELFKGNGYDETCDVYAFGIVLWEIIARKEPYENINSWSIPVLVAKGERPTIPA-DCPSEYSKLIKACWTDKPKKRPSFKEICDTLKKISESL 643          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: PYK3_DICDI (Dual specificity protein kinase pyk3 OS=Dictyostelium discoideum GN=pyk3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  404 RYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYE-PYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIK 685
            R+ +PE+ K   Y++KVDV+SF +++YE+  G+ P    +    AAK   E +RP          LR+L  KCWA+D +QRPSF +IL  LE +K
Sbjct: 1212 RWRSPELTKGLVYNEKVDVYSFGLVVYEIYTGKIPFEGLDGTASAAKAAFENYRPAI-PPDCPVSLRKLITKCWASDPSQRPSFTEILTELETMK 1305          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: LIMKB_DICDI (Probable LIM domain-containing serine/threonine-protein kinase DDB_G0286997 OS=Dictyostelium discoideum GN=DDB_G0286997 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 38/105 (36.19%), Postives = 58/105 (55.24%), Query Frame = -1
Query:  395 MTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIKETL 709
            MT   G+  YM+PE+FK   YD+  DV++F ++L+E++  + P  N   +     VA+G RP   A     E  +L + CW     +RPSF +I   L+KI E+L
Sbjct:  856 MTMNLGTSCYMSPELFKGNGYDETCDVYAFGIVLWEIIARKEPYENINSWSIPVMVAKGDRPTIPA-DCPSEYSKLIKACWTDKPKKRPSFKEICDTLKKISESL 959          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: RCKA_DICDI (RGS domain-containing serine/threonine-protein kinase A OS=Dictyostelium discoideum GN=rckA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 36/103 (34.95%), Postives = 53/103 (51.46%), Query Frame = -1
Query:  407 YKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPPLANYEPYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKI 715
            Y MT   G+  +MAPE+F  R Y  KVDV+S+A+IL+E+   +         +    V +G RP    K     +  + +KCW    + RPSF+ I+  LE I
Sbjct:  991 YNMTTHVGTQAWMAPEIFTSRTYTNKVDVYSYAIILFEIFTRKSAYDENANINIPNMVMKGERPEL-PKDMQTSISNIIKKCWQQKPSNRPSFIKIVAYLESI 1092          
BLAST of CN189252 vs. ExPASy Swiss-Prot
Match: SHKB_DICDI (Dual specificity protein kinase shkB OS=Dictyostelium discoideum GN=shkB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.383e-11
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  386 KMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGEPP---LANYEPYDAAKYVAEGHRPFFRAKGFTPELRELTEKCWAADMNQRPSFLDILKRLEKIKETLPTD 712
            K+ G+ GS  YMAPE+  ++ YD KVDVFSF+++L+E+L  + P   L +  P      V + +RP      F   L++L  +CW    ++RPSF +I K  ++I ET+  D
Sbjct:  330 KLLGQAGSPLYMAPEMLVNQPYDGKVDVFSFSILLWELLTKQEPYNKLYSSYPQLVEGVVNKKNRPII-PDYFPTRLKDLLARCWDHYPSRRPSFAEISK--QRILETILID 438          
The following BLAST results are available for this feature:
BLAST of CN189252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
HT1_ARATH3.983e-1439.82Serine/threonine-protein kinase HT1 OS=Arabidopsis... [more]
Y9963_DICDI1.673e-1239.58Probable serine/threonine-protein kinase DDB_G0272... [more]
ROCO4_DICDI2.185e-1235.65Probable serine/threonine-protein kinase roco4 OS=... [more]
YTYK2_DICDI2.854e-1240.78Probable tyrosine-protein kinase DDB_G0283397 OS=D... [more]
LIMKA_DICDI4.869e-1235.85Probable LIM domain-containing serine/threonine-pr... [more]
PYK3_DICDI6.359e-1241.05Dual specificity protein kinase pyk3 OS=Dictyostel... [more]
LIMKB_DICDI6.359e-1236.19Probable LIM domain-containing serine/threonine-pr... [more]
RCKA_DICDI4.122e-1134.95RGS domain-containing serine/threonine-protein kin... [more]
SHKB_DICDI5.383e-1137.50Dual specificity protein kinase shkB OS=Dictyostel... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189252 ID=CN189252; Name=CN189252; organism=Citrus sinensis; type=EST; length=736bp
CCCTTTTTAAGACAAAGCTTCACTTTGGGACGACCAAAAATTACAATTGA
AAGATTCGACTGAAAATCTATTGCCAAATGATTGAATATTAAGCGTTGAT
TTGGGGCGAAACTAAAAAATATGCTAGTTTGAGAACCACATAAAAGACAG
AGAAGTAAAAACTGAAGAAGTAAATGAATAGCAGCTACTCTGTTCATCGA
GAGAATCTGAACAGATTAGCGGAAATCTATCAAAGCAATAGTTCTCACAA
GCTTCCTCAGTTAAGTCTATTCACAACACCACCCTGCAAGACTGGGTGTA
CAGGAAGTGAGGCAGAAACCGCATATAGAGCACCTAGTGTGCACTCCCAA
CTCTGACACTATGCATTGAATATGTTCCAATGATGATCTGTTGGTAAAGT
TTCCTTGATCTTTTCAAGCCTCTTGAGAATATCCAAGAATGAAGGTCTTT
GGTTCATGTCAGCAGCCCAGCACTTCTCTGTTAACTCTCTCAATTCAGGT
GTAAATCCTTTCGCACGGAAAAAAGGCCTATGTCCCTCTGCCACATATTT
TGCTGCATCATAAGGCTCGTAATTTGCAAGTGGTGGTTCTCCTTCAAGCA
TCTCATAGAGTATCATTGCAAAAGAGAAAACATCAACCTTCTTGTCGTAT
TTCCGGTGCTTGAAGACCTCAGGAGCCATATACCGGTAACTCCCAGTCTC
CCCAGTCATTTTGTACACATCATGAGAATTCTGCCT
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