CN189251

Overview
NameCN189251
Unique NameCN189251
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: NSP5_ARATH (Nitrile-specifier protein 5 OS=Arabidopsis thaliana GN=NSP5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.389e-53
Identity = 95/175 (54.29%), Postives = 122/175 (69.71%), Query Frame = 2
Query:   14 GRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            GR+N L  +DVVD+KW++YP+AGE CKGRG PGL+V +G+IWV++GF G E+ D+HCFD A  QW  VET+G+ P ARSVF  V  GK+IV+YGGE +P +L H+GAGK +GE+Y LDTETLVW R   G   +  P  RGWCAF                NSP+N+RLDD+ F+
Sbjct:  145 GRVNTLHAYDVVDQKWVEYPAAGEACKGRGAPGLVVVEGRIWVLFGFDGNELGDIHCFDLASEQWKAVETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIVCG-NEEEKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFW 318          
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: NSP1_ARATH (Nitrile-specifier protein 1 OS=Arabidopsis thaliana GN=NSP1 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 8.449e-43
Identity = 79/176 (44.89%), Postives = 107/176 (60.80%), Query Frame = 2
Query:   11 SGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  IGKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A                  +P+NDR DD++F+
Sbjct:  290 TARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAIGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIDGKKGLVMHGGKAPTNDRFDDLFFY 465          
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: NSP4_ARATH (Nitrile-specifier protein 4 OS=Arabidopsis thaliana GN=NSP4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.441e-42
Identity = 78/176 (44.32%), Postives = 107/176 (60.80%), Query Frame = 2
Query:   11 SGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            + RLN L  +++VD+KW    + G++   RGG GL V QGK+WVVYGF G EVDDVH +DP   +W QVET G +P+ RSVF++  +GKHIV++GGE+    L H+G G+     ++LDTETL W R D   G +  P  RGW A                  +P+NDR DD++F+
Sbjct:  439 TARLNTLDSYNIVDKKWFHCSTPGDSLTARGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAALGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGGEEETPSSRGWTASTTATIGGKKGLVMHGGKAPTNDRFDDLFFY 614          
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: NSP2_ARATH (Nitrile-specifier protein 2 OS=Arabidopsis thaliana GN=NSP2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.211e-42
Identity = 83/180 (46.11%), Postives = 109/180 (60.56%), Query Frame = 2
Query:    5 GVSG--RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            GVS   RL  L  +++VD KW+Q  + G +C  RGG GL V QGK+WVVYGF G EVDDVHC+DPA  +W QVET GEKP ARSVF++  +GKHI+V+GGE+      H G G+ +G  ++LDTETL W + D     +  P  RGW A                  + +NDR  D++F+
Sbjct:  287 GVSATVRLKTLDAYNIVDHKWVQCSTPGGSCSVRGGAGLEVVQGKVWVVYGFNGCEVDDVHCYDPAQDKWTQVETFGEKPCARSVFASAVVGKHILVFGGEIAMDPKAHEGPGQLSGGTFALDTETLKWEKLDKLGEEEETPSIRGWSASTTGTIDGKKGLVMFGGKAQTNDRFGDLFFY 466          
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: NSP3_ARATH (Nitrile-specifier protein 3 OS=Arabidopsis thaliana GN=NSP3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.948e-39
Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 2
Query:    5 GVSGRLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFAGVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPGPRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            G   R+  L  +++VD+ W    + G++   RGG GL V QGK+W+VYGF G EVDDVH +DPA  +W QVET G KP  RSVF++  IGKHIV++GGE+      H+G G+     ++LDTETL W R D   G+   P  RGW A                  +P+NDR DD++F+
Sbjct:  288 GAMDRIKTLDSYNIVDKTWFHCSNPGDSFSIRGGAGLEVVQGKVWIVYGFNGCEVDDVHFYDPAEDKWTQVETFGVKPNERSVFASAAIGKHIVIFGGEIAMDPRAHVGPGQLIDGTFALDTETLQWERLDKFEGT---PSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 462          
BLAST of CN189251 vs. ExPASy Swiss-Prot
Match: ESP_ARATH (Epithiospecifier protein OS=Arabidopsis thaliana GN=ESP PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 4.965e-35
Identity = 76/184 (41.30%), Postives = 103/184 (55.98%), Query Frame = 2
Query:   17 RLNDLWGFDVVDRKWIQYPSAGENCKGRGGPGLIVTQGKIWVVYGFA---------GVEVDDVHCFDPAHAQWAQVETSGEKPTARSVFSTVGIGKHIVVYGGEVDPSDLGHLGAGKFAGELYSLDTETLVWTRWDDGPGSDHHPG-PRGWCAFAXXXXXXXXXXXXXXXNSPSNDRLDDIYFF 538
            R   +  +++ D KW Q P  G+N + RGG G  V QGKIWVVYGFA           E + V  +DPA  +W +VET+G KP+ARSVF+   +GK+I+++ GEV P   GH G G  + E Y+LDTETLVW +     G +  P  PRGW A+                  P+N+R DD+YF+
Sbjct:  157 RFRTIEAYNIADGKWAQLPDPGDNFEKRGGAGFAVVQGKIWVVYGFATSIVPGGKDDYESNAVQFYDPASKKWTEVETTGAKPSARSVFAHAVVGKYIIIFAGEVWPDLNGHYGPGTLSNEGYALDTETLVWEKL----GEEGAPAIPRGWTAYTAATVDGKNGLLMHGGKLPTNERTDDLYFY 336          
The following BLAST results are available for this feature:
BLAST of CN189251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NSP5_ARATH1.389e-5354.29Nitrile-specifier protein 5 OS=Arabidopsis thalian... [more]
NSP1_ARATH8.449e-4344.89Nitrile-specifier protein 1 OS=Arabidopsis thalian... [more]
NSP4_ARATH1.441e-4244.32Nitrile-specifier protein 4 OS=Arabidopsis thalian... [more]
NSP2_ARATH3.211e-4246.11Nitrile-specifier protein 2 OS=Arabidopsis thalian... [more]
NSP3_ARATH1.948e-3943.26Nitrile-specifier protein 3 OS=Arabidopsis thalian... [more]
ESP_ARATH4.965e-3541.30Epithiospecifier protein OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001I22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189251 ID=CN189251; Name=CN189251; organism=Citrus sinensis; type=EST; length=610bp
GAGGGGTGTTTCAGGCCGGCTTAATGATCTATGGGGTTTTGATGTTGTTG
ATAGAAAATGGATCCAATATCCATCGGCAGGGGAGAACTGCAAGGGTAGA
GGTGGGCCCGGGTTGATAGTGACCCAGGGGAAGATATGGGTTGTGTATGG
TTTTGCTGGAGTGGAAGTGGATGATGTGCATTGCTTTGATCCAGCCCATG
CACAATGGGCCCAGGTAGAGACGAGCGGCGAAAAACCAACAGCTCGGAGC
GTATTTTCTACTGTTGGGATCGGAAAACACATAGTCGTCTACGGCGGAGA
AGTAGACCCCAGTGACTTGGGCCACCTTGGGGCCGGAAAATTCGCCGGTG
AACTTTACTCATTGGACACTGAGACATTGGTGTGGACACGGTGGGATGAT
GGGCCCGGCTCAGATCATCATCCCGGGCCTCGCGGATGGTGTGCATTTGC
TGGTGGGCTTAGGGGTGGAAAACATGGACTACTGGGATACGGTGGCAATT
CTCCAAGTAATGATAGGCTTGATGACATTTACTTCTTTACTCCTTGCTTG
GATGGGATTGAAGATTAATCATTTTGATAATGATGGTGATGTAATTATGG
CAATATGCGT
back to top