CN189242

Overview
NameCN189242
Unique NameCN189242
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4979 contig Csv1_Contig4979:74..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.714e-19
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   55 ATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 333
            A  +TC QV+  L PCI+Y   GGAV PACC+GIR +N  +KTT DR+T CNC+K+ +A +PG+N +    LP  C    PYK++   +C+ V
Sbjct:   24 AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATV 116          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   55 ATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 336
            A  I+C QVT  L PC  Y   GG V PACC+G+R LN A+KTT DR+T C C+K   A    +N +  N+LP  C     YK+T ++DCSK++
Sbjct:   23 ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKIH 116          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 45/95 (47.37%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   49 NAATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 333
            + A  ITC QVT  L PCI Y   GGAV PACC+GIR +N  ++TT DR+T CNC+K  A  I G+N +    LP  C    PYK++   +C+ V
Sbjct:   20 SVAHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.111e-18
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   64 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 333
            ++C QV+  L PCISY   GGAV PACC G+++LN+A+KTT DR+  C C+K     I G+N     + P  C    PYK++   DCSKV
Sbjct:   26 LSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKV 115          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   49 NAATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 333
            + A  ITC QV+  L PCI+Y   GGAV PACC+GI+ +N  +KTT DR+  CNC+K  A  + G+N     +LP  C    PYK++   +C+ V
Sbjct:   20 SVAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATV 114          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 43/90 (47.78%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   64 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKV 333
            ITC QV+  L PCI+Y   GGAV PACC+GIR +N  ++TT DRR  CNC+K+ +  IPG+N +    LP  C    PYK++   +C+ V
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATV 90          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    7 VSIATMXXXXXXXXNAATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 336
            V +A +        +AA  ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS+V+
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.895e-18
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    7 VSIATMXXXXXXXXNAATTITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 336
            V +A +        +AA  ITC QV   + PC++Y   G     ACC G+R+L AA+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS+V+
Sbjct:    7 VLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   64 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 336
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS VN
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
BLAST of CN189242 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.223e-18
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   64 ITCEQVTIWLTPCISYGVLGGAVQPACCDGIRALNAASKTTEDRRTQCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLDCSKVN 336
            I+C QV   ++PC+SY   G     ACC G+R+LN+A+ TT DRRT CNC+K  A  I GLN     ++P  C    PY ++  +DCS VN
Sbjct:   28 ISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 118          
The following BLAST results are available for this feature:
BLAST of CN189242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
NLTP_PRUAV1.714e-1947.31Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_GERHY3.819e-1946.81Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP_MALDO4.988e-1947.37Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_HELAN1.111e-1846.67Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_PYRCO1.451e-1844.21Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUDO1.895e-1847.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_ORYSJ1.895e-1840.00Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.895e-1840.00Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP2_ORYSI4.223e-1845.05Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ4.223e-1845.05Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189242 ID=CN189242; Name=CN189242; organism=Citrus sinensis; type=EST; length=609bp
ATTACAGTGTCTATTGCAACAATGTTGTTGTTATTGTTCCTTCCCCTGAA
TGCAGCAACAACAATAACATGTGAGCAAGTGACAATCTGGCTGACACCAT
GCATCAGCTATGGCGTATTGGGTGGGGCTGTTCAACCAGCTTGTTGTGAT
GGCATTAGAGCTTTGAATGCTGCTTCAAAAACCACAGAAGATAGAAGGAC
CCAATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTCAACT
ATGATCGTGTTAATACGCTTCCTGATATTTGTCGGAGTAAATGTCCTTAT
AAACTTACACATGATCTTGATTGCTCTAAGGTGAACTAAATCTGCAGTTT
GCACGGGCGGGGGTATCTGGTTTATTGATAAGTCACGAATGAAGTCTACA
AAGAGAATAAGGCTGCTACTTTTGGCTTATTGTCCTAAAAATATCTTCTA
TTACTCTAAAATAAAGCCTGAGATATTTTATTGGCATTTTGCATTTTACA
TTATTATACAAGTCATTCTAATGATATGTGTTGCAATGTAAACATATATG
ATATTTACGTGTGCAAAGTGAATGTCCTTTCTTTATTCTTATGGGTAAAT
TAAAATCCT
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