CN189227

Overview
NameCN189227
Unique NameCN189227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3228 contig Csv1_Contig3228:22..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH3_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial OS=Arabidopsis thaliana GN=IDH3 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.575e-39
Identity = 79/95 (83.16%), Postives = 89/95 (93.68%), Query Frame = -2
Query:  254 VMPGGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 538
            VMPGGNVGA+ A+ EQGASAGNVGN+K+VEQKKANPVALLLSSAMMLRHL+FP+FADRLETAVK+VI E KYRTKDLGG CTTQ++VDAVIA L+
Sbjct:  274 VMPGGNVGAEHAIFEQGASAGNVGNDKMVEQKKANPVALLLSSAMMLRHLRFPTFADRLETAVKQVIKEGKYRTKDLGGDCTTQEVVDAVIAALE 368          
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH1_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial OS=Arabidopsis thaliana GN=IDH1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.162e-36
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = -2
Query:  254 VMPGGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 538
            VMPGGNVGAD AV EQGASAGNVG +K+V + KANPVALLLSSAMMLRHLQFPSFADRLETAVK+VI+E K RTKDLGG  TTQ++VDAVIA LD
Sbjct:  273 VMPGGNVGADHAVFEQGASAGNVGKDKIVLENKANPVALLLSSAMMLRHLQFPSFADRLETAVKKVIAEGKCRTKDLGGTSTTQEVVDAVIAKLD 367          
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH2_ARATH (Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial OS=Arabidopsis thaliana GN=IDH2 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.769e-36
Identity = 77/95 (81.05%), Postives = 83/95 (87.37%), Query Frame = -2
Query:  254 VMPGGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 538
            VMPGGNVGA+ AV EQGASAGNVG +   EQK ANPVALLLSSAMMLRHLQFPSFADRLETAVKRVI+E   RT+DLGG  TTQ++VDAVIANLD
Sbjct:  273 VMPGGNVGAEYAVFEQGASAGNVGKDTTEEQKNANPVALLLSSAMMLRHLQFPSFADRLETAVKRVIAEGNCRTEDLGGNSTTQEVVDAVIANLD 367          
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH4_ARATH (Putative isocitrate dehydrogenase [NAD] subunit-like 4 OS=Arabidopsis thaliana GN=IDH4 PE=5 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.077e-16
Identity = 52/92 (56.52%), Postives = 60/92 (65.22%), Query Frame = -2
Query:  254 GGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 529
            GG+ G D A+ EQ    G+VGN K       NPVALL SS MMLRHL  P FADRL+TAV RVISE K    +     TTQ++VD+VIANLD
Sbjct:  217 GGSFGDDYAIFEQ---VGSVGNHK-------NPVALLFSSVMMLRHLLLPLFADRLKTAVTRVISEGKCGNSN----TTTQEVVDSVIANLD 294          
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH1_KLULA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Kluyveromyces lactis GN=IDH1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  257 VMPGGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANL 538
            ++PG N G + AV E G+   +VG + +  Q  ANP A++LSS +MLRHL   ++ADR+  A   VISE K  T+D+GG  +T +  +AVI  L
Sbjct:  268 LVPGANFGREYAVFEPGSR--HVGLD-IKGQNVANPTAMILSSTLMLRHLGLNAYADRISKATYDVISEGKSTTRDIGGSASTSEFTNAVIEKL 358          
BLAST of CN189227 vs. ExPASy Swiss-Prot
Match: IDH1_AJECA (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulata GN=IDH1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.918e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  254 VMPGGNVGADTAVXEQGASAGNVGNEKVVEQKKANPVALLLSSAMMLRHLQFPSFADRLETAVKRVISEEKYRTKDLGGGCTTQQIVDAVIANLD 538
            ++PG N+G D AV E G    +VG + +  + +ANP AL+LS +M+LRHL     A+R+  AV  VI E   RT+D+GG  +T +   AV+  ++
Sbjct:  294 IVPGCNMGRDVAVFEPGCR--HVGLD-IKGKDQANPTALILSGSMLLRHLGLDEHANRISKAVYDVIGEGVTRTRDMGGQASTHEFTRAVLDKME 385          
The following BLAST results are available for this feature:
BLAST of CN189227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IDH3_ARATH5.575e-3983.16Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH1_ARATH1.162e-3682.11Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH2_ARATH5.769e-3681.05Isocitrate dehydrogenase [NAD] regulatory subunit ... [more]
IDH4_ARATH5.077e-1656.52Putative isocitrate dehydrogenase [NAD] subunit-li... [more]
IDH1_KLULA8.962e-1343.62Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
IDH1_AJECA4.918e-1140.00Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189227 ID=CN189227; Name=CN189227; organism=Citrus sinensis; type=EST; length=539bp
TCAGATTTTGACCATTAAATTGGAGACTTTTTGTTTATCAATTCATTTGT
CAATAACGACTATAAACTCAAATAATTTTTGAAAAATGATAAACGCTATG
GAAAAGCAACACAGCCGGATAGCCTAAAAACGAGATTCCAAAAGCTTCAA
GAAAATCAGAACATGTAGAAATGGCAAAGAGTAAGGAATGAGAAACTCAA
ATGAAGTCCACGTGCCAGAACTATGACAGGAATGCTACAAGTGAATCAAA
TCAATCCAGATTAGCAATGACTGCATCGACAATCTGTTGAGTGGTGCAGC
CTCCACCGAGATCTTTGGTTCTGTACTTTTCCTCTGATATTACGCGTTTC
ACTGCAGTCTCTAGTCGATCAGCAAATGAAGGGAACTGCAAATGTCTTAG
CATCATGGCTGATGAAAGAAGCAAAGCCACTGGATTTGCTTTCTTTTGTT
CAACTACTTTCTCATTTCCCACATTTCCTGCTGATGCACCTTGCTCNAAA
ACAGCGGTATCAGCTCCCACATTACCTCCAGGCATGACA
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